Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0484
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.5  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   5.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 352 FFYYKLGNLLYCSHWEVYSLYLVSAFC 432
           +FYY   +LL+C  + +++++L+   C
Sbjct: 260 YFYYM--HLLFCCAFIIFTMHLLFLLC 284


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 504 TLIATLYCALHLQSTPWTIVCAV 572
           TL+    C LHL  TP+ ++  V
Sbjct: 271 TLLILFSCLLHLVVTPYYLLIEV 293


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 599 DDGVYTRRIIGHEVLWKHVQIISFKHIADLTQKPCVLY 712
           DDG  TR      V  K V+ +  + I DL     VLY
Sbjct: 24  DDGTRTRNKAAECVFGKQVRELGSQWIPDLGVPIGVLY 61


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 316 IPRNRHIPNPKNRCVLLKVKYS 251
           +P  R IP+PK    +L  K S
Sbjct: 71  LPPKREIPSPKRSSPILAEKVS 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,699
Number of Sequences: 336
Number of extensions: 3274
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)