Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0484
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    45   1e-05
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    29   0.67 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.5  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 30/114 (26%), Positives = 47/114 (41%)
 Frame = +3

Query: 246 QKEYFTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXX 425
           Q   F+LSR +R                      PVL+L+ RKF                
Sbjct: 56  QSSEFSLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFA 115

Query: 426 XXYGPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMA 587
              G  AH + + + ER   T  Y +TL+AT+   + ++ST  +IV  VL +++
Sbjct: 116 IVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILS 169


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 455 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIILDDDGVYTRRIIGH 634
           V+ L  +S + +  ++   SD  L  T+    ++ ++C     GI   D+G Y   +IG 
Sbjct: 390 VSGLPLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTDNGAYDIYMIGD 449

Query: 635 E 637
           E
Sbjct: 450 E 450


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 334 HLSTYQFFYYKLGNLLYCSHWEVYSLYLVSAFCTDHGHI*SQCSQRK 474
           HLST +      G  L C+H +++ L  +  +C + G   S  S +K
Sbjct: 601 HLSTPKIIPVYGGRTLSCTHKDIFDLQNILRYCDERGDFSSFPSFKK 647


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,991
Number of Sequences: 5004
Number of extensions: 55171
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)