Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0484
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0835 + 6524532-6524648,6524748-6524801,6525528-6525601,652...    36   0.032
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    33   0.30 
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    29   3.7  
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317...    29   3.7  
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241...    28   8.6  
02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209     28   8.6  
01_06_0068 + 26163623-26163740,26163749-26165274                       28   8.6  

>01_01_0835 +
           6524532-6524648,6524748-6524801,6525528-6525601,
           6525795-6525912,6526008-6526070
          Length = 141

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 435 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 596
           GP   L+ M    R   T+IY   +   L  AL + S   T++  + ++ ALFW
Sbjct: 88  GPSQQLRMMLDPVRVYATAIYGGFVFLALIFALWIHSKVLTLIAIICEICALFW 141


>06_02_0060 -
           11026885-11026929,11027732-11027756,11027886-11027992,
           11028023-11028103,11028301-11028405,11031495-11031762,
           11031854-11032056
          Length = 277

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +3

Query: 342 YIPVLLLQARKFAXXXXXXXXXXXXXXXXXYGPWAHLKSMFSKERALTTSIYSITLIATL 521
           ++PV+++  +KFA                  GP +    M S ER   T      ++ T+
Sbjct: 114 FLPVMVIMPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTI 173

Query: 522 YCALHLQSTPWTIVCAVLQ 578
           Y ++ L S   +++ +VLQ
Sbjct: 174 YVSMFLHSYFLSVIFSVLQ 192


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
           +Y   D +   NID     +LP   F+A++ C C+  ++  PQ  +GY
Sbjct: 117 VYLDADIQVFDNIDE--LFELPKGHFYAVMDCFCEKTWSHTPQYQIGY 162


>02_03_0065 -
           14629676-14629804,14631119-14631247,14631383-14631736,
           14631817-14632063,14632155-14632231,14632574-14632648,
           14632721-14632822,14632966-14633084,14633538-14633627,
           14634866-14635022,14635085-14635098,14635425-14635548,
           14635628-14635678,14635793-14635891,14636962-14637072
          Length = 625

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 502 IL*IDVVRALSFENIDFKCAHGPYRKLKLSIKNKLPN 392
           IL +++VRA+     DF     PY KLKL+ + KLP+
Sbjct: 348 ILHVNIVRAVKLTKKDFLGKSDPYVKLKLT-EEKLPS 383


>11_08_0095 -
           28323425-28323494,28323577-28323657,28323744-28324157,
           28324236-28324381,28325911-28326048,28326192-28326224
          Length = 293

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 325 KHRIPRNRHIPNPKNRCVLLKVKYSFCTS 239
           K++I +  + P+ +NRCVL  + Y  C +
Sbjct: 53  KYKIQKKSNTPSYQNRCVLRLILYHVCVN 81


>02_05_0503 - 29574135-29574536,29575075-29575959,29576129-29576209
          Length = 455

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 554 DHSMCCLTSHGIILDDDGVYTRRIIGHEVLWKHVQIISFKHIADLTQKPCV 706
           +H++  L+    + DDD +     +GH +  + V++I F  + +     C+
Sbjct: 117 EHTISLLSMRFYLRDDDCISFGHTVGHVMATQKVEMIEFTILTEKDDNQCI 167


>01_06_0068 + 26163623-26163740,26163749-26165274
          Length = 547

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 118 INICFKTKVVGVINLVYQVFQRLPSCLVRRLRRAQQAVGS 237
           + I   T V  V+  +++ +Q L SC+ RRLRR   A  +
Sbjct: 150 VAILIGTIVALVVYCIWKPYQALLSCIERRLRRKAAAAAT 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,923,916
Number of Sequences: 37544
Number of extensions: 314321
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)