Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0484
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 32 0.54
SB_56164| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_10375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43) 30 1.6
SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8) 30 2.2
SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025) 29 2.9
SB_11156| Best HMM Match : Ets (HMM E-Value=1.3) 29 3.8
SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48) 29 5.0
SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2) 29 5.0
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_59111| Best HMM Match : Ets (HMM E-Value=1.3) 28 8.8
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG+ I L+Y++ +DI C+ K+TVDH+M C
Sbjct: 408 LPLREMG---YNLNKGEFRDAIKLRYDWPINDIPTTCVCGDKFTVDHAMIC 455
>SB_56164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.9 bits (69), Expect = 0.54
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 446 TFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
T N+ KG+ I L+Y++ +DI C++ K+TVDH+M C
Sbjct: 45 TVGYNLNKGEFRDAIKLRYDWPINDIPTTCVSGDKFTVDHAMIC 88
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 31.9 bits (69), Expect = 0.54
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG+ I L+Y++ +DI C+ K+TVDH+M C
Sbjct: 669 LPLREMG---YNLNKGEFRDPIKLRYDWPINDIPTTCVCGDKFTVDHAMIC 716
>SB_10375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG I L+Y++ +DI C+ K+TVDH+M C
Sbjct: 88 LPLREMG---YNLNKGGFRDAIKLRYDWPINDIPTTCVCGDKFTVDHAMIC 135
>SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG I L+Y++ +DI C+ K+TVDH+M C
Sbjct: 289 LPLREMG---YNLNKGGFRDAIKLRYDWPINDIPTTCVCGDKFTVDHAMIC 336
>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
Length = 491
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG+ I L+Y++ +DI C+ K+TV+H+M C
Sbjct: 348 LPLREMG---YNLNKGEFRDAIKLRYDWPINDIPTTCMCGDKFTVNHAMIC 395
>SB_37335| Best HMM Match : Sigma54_activat (HMM E-Value=7.8)
Length = 206
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG+ I + Y++ +DI C+ K+TVDH+M C
Sbjct: 121 LPLREMG---YNLNKGEFRDAIKILYDWPINDIPTTCVCGDKFTVDHAMIC 168
>SB_33381| Best HMM Match : RVT_1 (HMM E-Value=0.025)
Length = 537
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 449 FEVNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCC 571
F++N + + + + + + +C+ S++TVDH+M C
Sbjct: 482 FDLNKREFRDAIRMRYDWPIPDNQSMCVCGSRFTVDHAMIC 522
>SB_11156| Best HMM Match : Ets (HMM E-Value=1.3)
Length = 248
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L+V + N+ KG I L+Y++ +DI C+ +TVDH+M C
Sbjct: 36 LTVLPLSEIGYNLNKGGFRDAIKLRYDWPINDIPTTCVCGDNFTVDHAMIC 86
>SB_33818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG I L+Y++ +DI C+ +TVDH+M C
Sbjct: 141 LPLREMG---YNLNKGGFRDAIKLRYDWPINDIPTTCVCGDNFTVDHAMIC 188
>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
Length = 675
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 425 LSVRTMGTFEVNVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
L +R MG N+ KG I L+Y++ +DI C+ +TVDH+M C
Sbjct: 445 LPLREMG---YNLNKGGFRDAIKLRYDWPINDIPTTCVCGDNFTVDHAMIC 492
>SB_920| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
Length = 238
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 469 FENIDFKCAHGPYRKLKLSIKNKLPNVNSRANFLACNRRTGM*INDSMKHRIPRNRHIPN 290
+ + ++CAH Y + K + + R G + MK+R N++I N
Sbjct: 174 YNPMKYRCAHNKYIYNPKTHKYCYGRIIPKGKHCVKLPRCGKRFYNPMKYRCAHNKYIYN 233
Query: 289 PKN 281
PKN
Sbjct: 234 PKN 236
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -1
Query: 469 FENIDFKCAHGPYRKLKLSIKNKLPNVNSRANFLACNRRTGM*INDSMKHRIPRNRHIPN 290
+ + ++CAH Y + K + + R GM + MK+R N++I N
Sbjct: 563 YNPMKYRCAHNKYIYNPKTHKYCYGRIIPKGKHCVKLPRCGMRFFNPMKYRCAHNKYIYN 622
Query: 289 PK 284
PK
Sbjct: 623 PK 624
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -1
Query: 469 FENIDFKCAHGPYRKLKLSIKNKLPNVNSRANFLACNRRTGM*INDSMKHRIPRNRHIPN 290
+ ++ ++CAH Y + K + + R G + MK+R N++I N
Sbjct: 1257 YNSMKYRCAHNKYIYNPKTHKYCYGRIIQKGKHCVKLLRCGKRFYNPMKYRCAHNKYIYN 1316
Query: 289 PK 284
PK
Sbjct: 1317 PK 1318
>SB_59111| Best HMM Match : Ets (HMM E-Value=1.3)
Length = 226
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 458 NVLKGKSSYNINLQYNFD-SDI-ILCLTSSKYTVDHSMCC 571
N+ KG I L+Y++ +DI C+ + +TVDH+M C
Sbjct: 4 NLNKGGFRDAIKLRYDWPINDIPTTCVCGNNFTVDHAMIC 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,740,625
Number of Sequences: 59808
Number of extensions: 400693
Number of successful extensions: 986
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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