Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0484
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26550.1 68417.m03824 expressed protein probable membrane pro... 43 2e-04
At5g56020.1 68418.m06990 expressed protein 41 7e-04
At5g24170.1 68418.m02844 expressed protein 40 0.001
At5g23550.1 68418.m02764 expressed protein 38 0.005
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot... 32 0.33
At1g56600.1 68414.m06509 galactinol synthase, putative similar t... 31 0.58
At1g09350.1 68414.m01046 galactinol synthase, putative contains ... 30 1.3
At1g66910.1 68414.m07604 protein kinase, putative similar to rec... 29 3.1
At5g30500.1 68418.m03751 galactinol synthase, putative similar t... 28 5.4
At4g26250.1 68417.m03778 galactinol synthase, putative similar t... 28 5.4
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 28 5.4
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 28 5.4
At2g17520.1 68415.m02026 protein kinase family protein / Ire1 ho... 28 5.4
At5g23790.1 68418.m02793 galactinol synthase, putative similar t... 28 7.2
>At4g26550.1 68417.m03824 expressed protein probable membrane
protein YBL102w, yeast, PIR2:S45393
Length = 225
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/85 (29%), Positives = 43/85 (50%)
Frame = +3
Query: 342 YIPVLLLQARKFAXXXXXXXXXXXXXXXXXYGPWAHLKSMFSKERALTTSIYSITLIATL 521
++PV++L +KFA GP L M S ER +T + T++ T+
Sbjct: 111 FLPVMVLMPQKFAICFTLGCGFIIGSFFALRGPKNQLAHMSSMERLPSTLGFIATMVGTI 170
Query: 522 YCALHLQSTPWTIVCAVLQVMALFW 596
Y ++ L S +++ +VLQV+AL +
Sbjct: 171 YVSMVLHSYILSVLFSVLQVLALVY 195
>At5g56020.1 68418.m06990 expressed protein
Length = 230
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +3
Query: 342 YIPVLLLQARKFAXXXXXXXXXXXXXXXXXYGPWAHLKSMFSKERALTTSIYSITLIATL 521
++PV++L +KFA GP L M S ER T + T++ T+
Sbjct: 116 FLPVMVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTI 175
Query: 522 YCALHLQSTPWTIVCAVLQVMAL 590
Y ++ L S +++ + LQV+AL
Sbjct: 176 YVSMVLHSYILSVIFSALQVIAL 198
>At5g24170.1 68418.m02844 expressed protein
Length = 163
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 435 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 596
GP + MF R L TSIY ++ L CAL + S T++ + ++ AL W
Sbjct: 85 GPEQQMSMMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCEICALIW 138
>At5g23550.1 68418.m02764 expressed protein
Length = 175
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 435 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 596
GP + M R T++Y ++I L+CAL++++ T++ +L+ L W
Sbjct: 97 GPQRQVTMMLDPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEFTGLIW 150
>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
similar to pseudouridine synthase 3 [Mus musculus]
GI:9652099; contains Pfam profile PF01416: tRNA
pseudouridine synthase
Length = 446
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1
Query: 532 KAQYNVAIKVIL*IDVVRALSFENIDFKCAHGPYRKLKLSIKNK 401
K QY +A ++ L V+R FEN+DF C+ G L+ KN+
Sbjct: 331 KPQYLLASEIPL---VLRTCEFENVDFICSPGAAESLRSHFKNE 371
>At1g56600.1 68414.m06509 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 GI:5608497 from
[Ajuga reptans]
Length = 335
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
IY D + NID DLP F+A++ C C+ ++ PQ +GY
Sbjct: 116 IYLDGDIQVFDNIDH--LFDLPNGQFYAVMDCFCEKTWSHSPQYKIGY 161
>At1g09350.1 68414.m01046 galactinol synthase, putative contains
Pfam profile: PF01501 glycosyl transferase family 8
Length = 334
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
IY D + NID DLP F+A+ C C+ ++ PQ +GY
Sbjct: 110 IYLDGDIQVFENIDH--LFDLPDGNFYAVKDCFCEKTWSHTPQYKIGY 155
>At1g66910.1 68414.m07604 protein kinase, putative similar to
receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 666
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -2
Query: 147 DDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQN 28
D F E N D +D +C F+ + C Y PQN
Sbjct: 226 DGFALEVNSDCRTCIDSKGACGFSQTSSRFVCYYRQEPQN 265
>At5g30500.1 68418.m03751 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 GI:5608497 from
[Ajuga reptans]
Length = 328
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
IY D + +NID D P +A+ C C+ ++ PQ +GY
Sbjct: 119 IYLDGDIQVFSNIDH--LFDTPSGYLYAVKDCFCEGSWSKTPQYKIGY 164
>At4g26250.1 68417.m03778 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 [Ajuga reptans]
GI:5608497; contains Pfam profile: PF01501 glycosyl
transferase family 8
Length = 336
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
IY D + +NID D P +A+ C C+ ++ PQ +GY
Sbjct: 119 IYLDGDIQVFSNIDH--LFDTPRGYLYAVKDCFCEISWSKTPQFKIGY 164
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 66 CKCKCKYNLRPQNNLGY 16
CKC+ +YN RP N GY
Sbjct: 230 CKCRNQYNFRPINAQGY 246
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 455 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIILDDDGVYTRRII 628
V ++ GKSS N+Q + I+ L SS + D S C LT +YT ++I
Sbjct: 359 VQLIFGKSSVFQNVQACVAASIVSNLDSSVWRYDGSSCNLTPPLAYFPRSVIYTLKLI 416
>At2g17520.1 68415.m02026 protein kinase family protein / Ire1
homolog-2 (IRE1-2) contains protein kinase domain,
Pfam:PF00069; identical to Ire1 homolog-2 [Arabidopsis
thaliana] GI:15277139, cDNA Ire1 homolog-2 GI:15277138
Length = 841
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 167 TKFFNACLPVS*GDSDEHNKQLVRRSTKRVFHFEQNTTILRIWNMSIS 310
TK NA + + + + L+RR+ ++ HF + T L +WN+++S
Sbjct: 179 TKITNALVKPASTEDFVNEPLLIRRTDSKLEHFSKTTGKL-VWNLTVS 225
>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 GI:5608497 from
[Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
transferase family 8
Length = 333
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 159 IYNSDDFRFEANIDLNLTLDLPFSCFFALIGCKCKCKYNLRPQNNLGY 16
IY D + NID D P +A+ C C+ ++ PQ +GY
Sbjct: 116 IYLDGDIQVFKNIDH--LFDTPRGYLYAVKDCFCEVSWSKTPQYKIGY 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,323,115
Number of Sequences: 28952
Number of extensions: 273301
Number of successful extensions: 594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -