Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0482
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    26   6.8  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    25   9.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 715 HLHQHSITLSNFFFRPYQISIPFSICNVSNV 623
           H+H H I   NFF   +QI +  S+ ++S++
Sbjct: 146 HVHFHLIPFINFFLLYHQIILSHSLFHISHL 176


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = -2

Query: 702 IPLHCPISSSDPTKFLYPFRYAMSLM*LN*EIILISTSTHIQPLLFTLIVLFTSKR 535
           I +H P+ SSD T FLY  + A  L      + L+ST + IQ +    I L   KR
Sbjct: 267 IMVHIPLFSSDFTDFLYK-KMAPPL------LTLLSTDSEIQYVALRNINLILQKR 315


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 57  LVYKRTSTSLWGEWMGVMHGDEMEYVFGHPLNMSLQYHSRERDLAAHIMQSFTQFALTGK 236
           L+  + S ++W  W+ V HG  +  V    L  SL     +   +AH+M     F+L+GK
Sbjct: 57  LINMQPSLAIWLHWIIVTHGGYLTTVM--DLQDSLVQLHEKLVQSAHLMTKI--FSLSGK 112


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 721  FFHLHQHSITLSNFFFRPYQISIPFSICNVSNVTKLRNNSNINVYTH 581
            F    Q  + + N+F  PY  +  FS+  +  +  LR++S+     H
Sbjct: 1056 FAEFFQVLLIIGNYFNEPYDRASAFSLYMIYRLETLRDSSSALTLMH 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,313
Number of Sequences: 5004
Number of extensions: 62109
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)