Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0482
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0337 + 42838260-42838344,42838972-42839084,42839652-428397...    31   1.0  
03_02_0717 - 10643285-10643584,10643877-10644020,10646241-106463...    29   4.1  
03_05_0151 - 21284751-21284800,21285422-21285521,21285702-212858...    29   5.4  
12_02_1267 - 27448871-27450445                                         28   7.1  
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028     28   7.1  
08_01_0676 - 5858945-5859496                                           28   9.4  
02_02_0317 + 8893593-8894207                                           28   9.4  

>01_07_0337 +
           42838260-42838344,42838972-42839084,42839652-42839729,
           42839831-42840054,42840084-42840128,42840156-42840264
          Length = 217

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 180 RDLAAHIMQSFTQFALTGKPHKPDEKWPVYSRSSPHYY 293
           RD+ AH     +      KP +P   WP  S +S  Y+
Sbjct: 77  RDMGAHFRVQHSHLLKRRKPSRPSSSWPTPSNNSDPYF 114


>03_02_0717 -
           10643285-10643584,10643877-10644020,10646241-10646321,
           10646506-10646589
          Length = 202

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 18  YE*SCNLHWILPTLVYKRTSTSLWGEWMGVMHGDEMEY 131
           Y  + N  W++P  +     T+ W +W G +  D +EY
Sbjct: 94  YTNTINHLWLMPLALELPLPTAHWAKWCGCLRIDPLEY 131


>03_05_0151 -
           21284751-21284800,21285422-21285521,21285702-21285863,
           21286010-21286157,21286286-21286362,21286519-21286589,
           21286696-21286782,21286943-21287374,21287478-21287913
          Length = 520

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 128 FHFVTMHHTHPFSPETCAGT 69
           F F+  HH HP +P+T  GT
Sbjct: 153 FVFMQQHHHHPTAPQTSGGT 172


>12_02_1267 - 27448871-27450445
          Length = 524

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 186 NHAPGNGTEGTCSRDVQKHIPFRHHASHPSI 94
           N+APG  T     + V  H+PF H A+  ++
Sbjct: 182 NNAPGASTSYYSRKSVWSHVPFEHPATFDTL 212


>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
          Length = 444

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 274 GLRLITTHTRRWVQAVQPDPAARV 345
           GLR IT +TR  VQ+V+ DPA  +
Sbjct: 222 GLRTITLYTRPKVQSVRLDPAPEI 245


>08_01_0676 - 5858945-5859496
          Length = 183

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 259 GLCTPGLRLITTHTRRWVQAVQPDPAARV 345
           G  T  L +     R W++AV P PAARV
Sbjct: 61  GCATVHLSMGGNRHRHWLRAVAPSPAARV 89


>02_02_0317 + 8893593-8894207
          Length = 204

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 304 RWVQAVQPDPAARVPPPALSG 366
           RW +  +PDPA+R P PA  G
Sbjct: 25  RWERHWRPDPASRRPDPASDG 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,291
Number of Sequences: 37544
Number of extensions: 410446
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)