Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0482
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...   127   1e-31
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score =  127 bits (307), Expect = 1e-31
 Identities = 56/107 (52%), Positives = 71/107 (66%)
 Frame = +3

Query: 66  KRTSTSLWGEWMGVMHGDEMEYVFGHPLNMSLQYHSRERDLAAHIMQSFTQFALTGKPHK 245
           +RTST+LWGEWMGV+HGDE+EYVFGHPLN SL+Y  +ERDL+  ++  F++FA  GKP K
Sbjct: 481 QRTSTNLWGEWMGVLHGDEVEYVFGHPLNKSLKYSDKERDLSLRMILYFSEFAYLGKPTK 540

Query: 246 PDEKWPVYSRSSPHYYTYTXXXXXXXXXXXXXXXXXCAFWNDFLNKL 386
            D +WP YSR  P Y+ +                  CAFWN+FL KL
Sbjct: 541 EDSEWPSYSRDEPKYFIF---DAEKTGLGKGPRTTYCAFWNEFLPKL 584


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 299 VCVVMRRRPGVHRPLLVRFVRFSGK--SKLCERLHNVCC 189
           VCV MR+ P  HRP+       +GK  +  CE LH   C
Sbjct: 103 VCVCMRKCPRRHRPVCAS----NGKIYANHCE-LHRAAC 136


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 682 NWTM*WNVGVSEKIIGLNLLGSH 750
           NW M W   +SEKI+   L+  H
Sbjct: 673 NWYMGWKGMLSEKILAEPLVKEH 695


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 165 TEGTCSRDVQKHIPFRHHASHPSILPRDL 79
           +E   S  +Q+ +   HH  H  ++ RDL
Sbjct: 7   SEADASHCIQQILESVHHCHHNGVVHRDL 35


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 440  TAVRTGHGAVTRYTLQLVKFVQ 375
            T V TG    T YT+Q++ F +
Sbjct: 1174 TTVLTGLRKYTNYTIQVLAFTR 1195


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 440  TAVRTGHGAVTRYTLQLVKFVQ 375
            T V TG    T YT+Q++ F +
Sbjct: 1170 TTVLTGLRKYTNYTIQVLAFTR 1191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,205
Number of Sequences: 438
Number of extensions: 4825
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)