Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0478
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   1.3  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 198 SIVKLNKTRRIHRYTIIAWPLRVSWRWNVGPQRNIGRL 311
           ++V+  + R I     +  P      WN GPQ  +G L
Sbjct: 311 ALVEYARIRGIRVVLEVDTPAHAGNGWNWGPQEGLGEL 348


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = +3

Query: 297 NIGRLPSPKSLWTTWPTNLPTVSQTPILQESRPSIGPSRGSNSRS 431
           N  ++  P+S  T W   +  + +   + E +   G + GS+  S
Sbjct: 21  NYQQVMEPRSPHTAWQFGVSQIVKREPMDEDKNDSGVTSGSDFHS 65


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 287 AHVPSPRNSEWPRDDGVPVN 228
           AH P P +S +P  + +P+N
Sbjct: 343 AHNPYPSHSIYPSSNLMPLN 362


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 245  HRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDADT 379
            + V  Q+F ++  GP ++      AE + +   DK T +   A T
Sbjct: 1072 YSVVVQAFNKVGAGPLSDDIKAYTAEGVPEQPPDKATCTTLTAQT 1116


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 354 PTVSQTPILQESRPSIGPS 410
           PT+S TP  + +RP   PS
Sbjct: 402 PTISTTPRPEWARPPSTPS 420


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 43  VQTRVRGCDERVS 5
           +  R+ GCD+R+S
Sbjct: 258 IDGRIIGCDQRIS 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,608
Number of Sequences: 336
Number of extensions: 2272
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)