Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0478
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   3.2  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    26   3.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   7.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   7.3  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   7.3  

>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 197 LDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDAD 376
           LD+E K  P  + V+        +LE ++   A    P    K M+    +      D +
Sbjct: 255 LDKEAKVRPRTNDVYEDFGLCNGYLEAKKLAKANLAEPITEAKKMNKENKQENVGAGDDE 314

Query: 377 TAGESPLHR 403
            A ESP+ R
Sbjct: 315 DASESPMVR 323


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 161 KRDQDSTDDFEHLDRETKQD 220
           K D D  DD+E LD +T +D
Sbjct: 282 KSDSDDEDDYEKLDAKTMKD 301


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
 Frame = +2

Query: 167 DQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFL-------EMERGPAAEHRPPSVAEK 325
           ++D +DD  + D+   +    S +  + +     L       + E   A+  RPP +   
Sbjct: 109 EEDDSDDSVNSDKLENEGSVGSSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNN 168

Query: 326 LMDHMADKFTDSESDADTAGES 391
             DH  DK    ESDA ++ +S
Sbjct: 169 --DHATDKENLLESDASSSNDS 188


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 305 ADVPLRAHVPSPRNSEWPRDDGVPVNPPGLV*FHDRDARNHPSSPGR 165
           AD+P  + +PS  +S   +   V  +PP L    D    +  SS G+
Sbjct: 276 ADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQ 322


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/63 (22%), Positives = 31/63 (49%)
 Frame = +2

Query: 152 QTMKRDQDSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLM 331
           QT+  +Q    +   L+ + K+D        + +  +SFL + R PA +  P +++ +L 
Sbjct: 38  QTLVSEQQKKIESSTLEVQKKKDQIRELERIYEMNPKSFLTLRRTPALKLLPETLSVELS 97

Query: 332 DHM 340
           + +
Sbjct: 98  NEV 100


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 258 LRVSWRWNVGPQRNIGRLPSPKSLWTTWPTNLPTVSQTPILQESRP 395
           LR  W+     +  +GRLP   S + T+PT     S    L  S P
Sbjct: 141 LRPQWKGFERLKAALGRLPGKWSFYLTFPTEKVDQSYQNNLSHSLP 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,529
Number of Sequences: 5004
Number of extensions: 37200
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)