Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0478
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    34   0.054
At4g05640.1 68417.m00880 hypothetical protein                          31   0.67 
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    30   1.2  
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    29   2.0  
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam...    29   2.0  
At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1) ide...    29   2.0  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    28   3.6  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    27   8.3  

>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 34.3 bits (75), Expect = 0.054
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 194 HLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLMDHMADKFTDSESDA 373
           HL++E KQD +  PV    VA +   + E     + +  S  E+ +  + +K   +    
Sbjct: 17  HLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEEAVSVVEEKSESAPEST 76

Query: 374 DTAGESP 394
           + A E+P
Sbjct: 77  EVASEAP 83


>At4g05640.1 68417.m00880 hypothetical protein
          Length = 207

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +2

Query: 173 DSTDDFEHLDRETKQDPADSPVHHHRVATQSFLEMERGPAAEHRPPSVA-EKLMDHMADK 349
           D+T  F      T +    SP HHH     S   ++      H PPS + ++ +DH+   
Sbjct: 102 DNTRPFTLPHHSTPRSSITSPHHHHHSTIHSTKLLDPLVEYHHSPPSASLDRTLDHVFTV 161

Query: 350 FTDSES 367
           +++  S
Sbjct: 162 YSNPHS 167


>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +3

Query: 288 PQRNIGRLPSPKSLWTTWPTNLPTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHR 458
           PQR I   P P   +   P  LPT S  PIL +  P+  P  GS  +     H   R
Sbjct: 33  PQRPITPSPPP---YVAKPQPLPTPSPKPILYQPPPTYQPPTGSFEQQFLDPHNTVR 86


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
 Frame = +2

Query: 170 QDSTDDFEHLDRETKQD--PA----DSPVHHHRVATQSFLEMERGPAAEHRPPSVAEKLM 331
           ++ TDD E ++  +  +  PA    D   HH  +        +  PAAE  P S+ ++  
Sbjct: 233 EEKTDDSEKVEESSHDEGTPAVSQHDETTHHDEIGNYKDYPSDEEPAAEGEPTSILDEAT 292

Query: 332 ------DHMADKFTDSESDADTA 382
                 +H+ ++  +S S  D++
Sbjct: 293 HTNPADEHVVERKEESTSSEDSS 315


>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
           protein 
          Length = 454

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 173 DSTDDFEHLDRETKQDPADSPVHHHRVA-TQSFLEMERGPAAEHR 304
           DS      LDR  + D  D  + HH++A  +  +E+ER  A  HR
Sbjct: 76  DSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHR 120


>At1g74040.1 68414.m08574 2-isopropylmalate synthase 1 (IMS1)
           identical to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687;  identical to cDNA
           2-isopropylmalate synthase (IMS1) GI:12330686
          Length = 631

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 354 PTVSQTPILQESRPSIGPSRGSNSRSLALRHRNHRCLKLTT 476
           P +S       S P++  S  S   SL LR +NHR + LTT
Sbjct: 9   PNLSSPSFGVPSIPALSSSSTSPFSSLHLRSQNHRTISLTT 49


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = +2

Query: 155 TMKRDQDSTDDFEHLDRETKQDPADSPVHHH-RVATQSFLEMERGPAAEHRPPSVAEKLM 331
           ++  D    D+ E+ +  +  D  DSP +   R+ + S  + E      H+   +     
Sbjct: 540 SLAHDDKEEDEEENHETRSYSDHDDSPRNTSMRINSLSHDDDEEEEEENHQT-RLEHIHS 598

Query: 332 DHMADKFTDSESDADTAGESPLHRPEPRVE 421
               D+   S+ DA  +GES LHR E + E
Sbjct: 599 SKSEDQSVYSDDDAGESGESSLHRIEAKEE 628


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 DFEHLDRETKQDPADSPVHH-HRVATQSFLEMERGPA 292
           DF H+D   + DP D+P  + HRV   +  E  +G A
Sbjct: 465 DFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKA 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,059,016
Number of Sequences: 28952
Number of extensions: 225533
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)