Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0476
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   3.5  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   4.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   4.7  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   4.7  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   4.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.2  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   8.2  

>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 212 SEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFK 334
           +E  A LL  +G    +DKW    W         PA+  F+
Sbjct: 429 AEPTAQLLPPDGLAWIDDKWSISPWTFTDTFWAQPAKTQFR 469


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 82  KRPI*KEGEKRPRTD*KGYIRECCTRHSNNICKNMGLCS 198
           +RP+    E  P TD   +   CC +H  + C+  GLC+
Sbjct: 131 QRPV--YAELSPVTD---FREACCRQHETSECQRGGLCN 164


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 329 NDPQPGSLQYMNSTTKVAHPICLLSI 252
           NDP P + +  N    +A PICL  I
Sbjct: 148 NDPTPFNARSANLKNYIAFPICLFVI 173


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 86  VRSKKREKKDPEQIEKVILESVVP 157
           V+  ++EK DP ++ + +LES+ P
Sbjct: 816 VKKNEKEKDDPMRLAQQLLESLAP 839


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 215 EYMAGLLAANGYKLTEDKW 271
           E +AGL A +G K  +DKW
Sbjct: 23  EIVAGLEAVDGQKFFQDKW 41


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 205  VVMSTAPCF--YIYCLSAWYNTL*YNLFNLF 119
            +V    PC    +Y L+AWYNT     F+ F
Sbjct: 4507 LVQKILPCSAGQMYALNAWYNTEKKKYFHTF 4537


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 77  NVSVRSKKREKKDPEQIEKVILE 145
           NV +RSK +  K P   E V+L+
Sbjct: 383 NVLIRSKPKNSKSPRNYEIVLLD 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,440
Number of Sequences: 5004
Number of extensions: 42403
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)