Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0476
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012...   107   4e-24
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299     39   0.002
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372...    28   3.5  
08_01_1050 - 10649434-10651917                                         28   3.5  

>04_03_0999 -
           21600231-21600788,21600896-21601056,21601149-21601241,
           21601379-21601531,21601917-21601992,21602078-21602197,
           21602348-21602597,21602917-21603008,21603408-21603581
          Length = 558

 Score =  107 bits (258), Expect = 4e-24
 Identities = 52/95 (54%), Positives = 68/95 (71%)
 Frame = +2

Query: 206 SDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAG 385
           SDSEYM+G L+A GY +TE+   A LWL+N+CTVK+P++      I   +S    +VVAG
Sbjct: 59  SDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAG 118

Query: 386 CVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEXTLK 490
           CVPQG+     L G+S++GVQQIDR+VEVVE TLK
Sbjct: 119 CVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLK 153


>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
          Length = 556

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 101 REKKDPEQIEKVILES--VVPGTQTIYVKTWGCAHNNSDSEYMAGLLAANGY-KLTEDKW 271
           R +  P  +    LES  V      IY +T+GC  N +D E +  ++   GY ++  D  
Sbjct: 26  RRRYSPAPLAPSPLESGPVTASKGRIYHETYGCQMNVNDMEIVLSIMKNEGYDEIVPDPE 85

Query: 272 DAQLWLLNSCTVKSPAE 322
            A++  +N+C ++  AE
Sbjct: 86  SAEIIFINTCAIRDNAE 102


>11_01_0484 -
           3720376-3720671,3721209-3721767,3722209-3722640,
           3723126-3723485
          Length = 548

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 269 WDAQLWLLNSCTVKSPAEDHFKNEIELGQSR 361
           W   LWLL +  +K+      K  IEL +SR
Sbjct: 449 WPVLLWLLTAACIKTGRPQMAKRAIELAESR 479


>08_01_1050 - 10649434-10651917
          Length = 827

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = +2

Query: 245 GYKLTEDKWDAQLWLLNS-------CTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQ 397
           G + TED W    W  N+        T +  A   F+++I LG +R +  +  GC+PQ
Sbjct: 609 GVQTTED-WSTDTWEDNNGGVATENITPEGTATWMFRHKIALGAARALAFLHHGCIPQ 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,018
Number of Sequences: 37544
Number of extensions: 283486
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)