Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0476
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)                172   1e-43
SB_57790| Best HMM Match : UPF0004 (HMM E-Value=5.6e-31)               35   0.042
SB_17134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)                   27   6.4  
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   8.4  

>SB_40| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score =  172 bits (419), Expect = 1e-43
 Identities = 80/134 (59%), Positives = 104/134 (77%), Gaps = 2/134 (1%)
 Frame = +2

Query: 47  TPKERYASRKNVSVRSKKREKKD--PEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY 220
           TP  R  +RK+V  +S+K  KKD   E+ E  + +S++PGTQTIYV+TWGC+HNNSDSEY
Sbjct: 21  TPVSRTNARKDVLPKSRKLAKKDRVKEEKEVPVGDSIIPGTQTIYVRTWGCSHNNSDSEY 80

Query: 221 MAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQG 400
           MAG LAA GYK+T+D+  A LWLLNSCTVKSPAED F+N I+  +++G H+VVAGCVPQG
Sbjct: 81  MAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGFRNAIKKAKAQGKHLVVAGCVPQG 140

Query: 401 APKSGYLHGLSIVG 442
            P+   + G+S+VG
Sbjct: 141 QPRHDTVKGISVVG 154


>SB_57790| Best HMM Match : UPF0004 (HMM E-Value=5.6e-31)
          Length = 206

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
 Frame = +2

Query: 182 TWGCAHNNSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSR 361
           T GC  N S++  +A      G++  + +  A ++++N+C+V   A+  FK  ++     
Sbjct: 11  TLGCKLNFSETSTIARNFQDEGFERVDFEEVADMYVINTCSVTENADKQFKQIVKKAMKL 70

Query: 362 GIHVVVA--GCVPQGAPKS-GYLHGLSIV-GVQQIDRIVEVVEXTLK 490
                VA  GC  Q  P+    + G+ +V G  +  +I + +    K
Sbjct: 71  NDKAFVAAVGCYAQLKPEELAAVDGVDLVLGATEKFKITDYINDLAK 117


>SB_17134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 236 PAVRPCTLNLSCYEHSPMFLHILFECLVQH 147
           P   P       Y HSP FL ++FE L  H
Sbjct: 29  PETTPTFPEQKLYRHSPKFLQVVFETLFVH 58


>SB_47532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +2

Query: 53  KERYASRKNVSVRSKKREKKDPEQIEK 133
           KER     N  VRSKK E   P   EK
Sbjct: 97  KERIIKNLNAKVRSKKNENSTPFHFEK 123


>SB_45459| Best HMM Match : RVT_1 (HMM E-Value=6e-36)
          Length = 1346

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 166 LSAWYNTL*YNLF-NLFGVFFLPLFRSDAYILPTSITFFRSYILGRY 29
           L A +  + Y L+  L+G++ LP       +L T++    ++ILGR+
Sbjct: 175 LLAAFTDMSYRLYLQLYGIYKLPWMSFPLNVLFTTMVLLNAWILGRH 221


>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 478 LHDLHNSVNLLYTNYTESM*VAT-----FWCALRYTACYNNMYA 362
           LH L+  +++LY  +T  M V T     F C LR  ACY  ++A
Sbjct: 257 LHVLYACLHVLYACFTCYMRVLTCYMRVFACYLRVFACYMRVFA 300


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +2

Query: 236  AANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFK-NEIELGQSRGIHVVVAGCVPQGAPKS 412
            A  GY L ED W  + W++   + ++  +   +  + +   S+G     A C P      
Sbjct: 1020 ARRGYMLPEDPWRIERWIVAEASHRAAEKRKIRAPQAQDSPSQGPVFPCATCSPTRQAGV 1079

Query: 413  GYLHGL 430
              LHGL
Sbjct: 1080 PPLHGL 1085


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,181
Number of Sequences: 59808
Number of extensions: 338478
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)