Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0476
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084268-3|AAK19005.5|  397|Caenorhabditis elegans Hypothetical ...    63   1e-10
AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical ...    52   2e-07
U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical pr...    44   6e-05
Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    28   3.2  
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    28   3.2  
AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z83319-4|CAB05909.1|  734|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   9.8  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC084268-3|AAK19005.5|  397|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.4 protein.
          Length = 397

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/62 (43%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = +2

Query: 80  VSVRSKKREKKDPEQIEKVILESVVPGT-QTIYVKTWGCAHNNSDSEYMAGLLAANGYKL 256
           + +R++K+  K+ +Q +   ++S+VPG  Q ++V+TWGC+HN SDSEYM+GLL   GY +
Sbjct: 20  IKIRTRKQVPKE-QQPDDANVDSMVPGVGQKVWVRTWGCSHNTSDSEYMSGLLQQAGYDV 78

Query: 257 TE 262
            +
Sbjct: 79  VK 80


>AC084268-1|AAM81103.2|  425|Caenorhabditis elegans Hypothetical
           protein Y92H12BL.1 protein.
          Length = 425

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 377 VAGCVPQGAPKSGYLHGLSIVGVQQIDRIVEVVEXTLK 490
           +AGCV Q AP   +L  +SIVGV+QIDRIVEVV  TLK
Sbjct: 1   MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLK 38


>U23172-3|AAC46526.1|  547|Caenorhabditis elegans Hypothetical
           protein F25B5.5 protein.
          Length = 547

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
 Frame = +2

Query: 164 QTIYVKTWGCAHNNSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEI 343
           +T+   T+GC  N SD E +  ++   G+  ++ K +A + LL +C+++  AE    N++
Sbjct: 79  RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138

Query: 344 ELGQSRGIH----VVVAGCVPQ 397
           +L +S  ++    V V GC+ +
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAE 160


>Z80217-8|CAB02294.1|  207|Caenorhabditis elegans Hypothetical
           protein F37B1.8 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 98  KREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEYMAG 229
           KR  K  E++ KV+ ESVVP  ++ Y K        S S ++ G
Sbjct: 109 KRGGKSEEEVAKVVSESVVPAMES-YFKLLNGLLERSKSGFLIG 151


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 92  SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 253
           S +   +DP     V+ + V  G + I +   GC+H   D+ Y  M  +   NGYK
Sbjct: 15  SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 92  SKKREKKDPEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEY--MAGLLAANGYK 253
           S +   +DP     V+ + V  G + I +   GC+H   D+ Y  M  +   NGYK
Sbjct: 15  SHEGSHQDPAPETLVVEKEVNNGEKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYK 70


>AF106591-1|AAD47131.2|  710|Caenorhabditis elegans Hypothetical
           protein T01A4.3 protein.
          Length = 710

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 62  YASRKNVSVRSKKREKKDPEQIEKVI 139
           YA +K+VS+RS++  K DP  +  ++
Sbjct: 351 YARKKSVSIRSRQSTKCDPRSLHTLM 376


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 476  PRPPQFCQSVVHQLY*VHVGSHFLVRPAVHSLLQQHVCHDSDQAQFH 336
            P P Q   S+ H L   H  +H ++  + H  +QQ   H + Q   H
Sbjct: 1441 PPPQQHSSSLQHHLQ-HHTSTHQMMDTSQHQTIQQQSNHPTQQQLQH 1486


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 476  PRPPQFCQSVVHQLY*VHVGSHFLVRPAVHSLLQQHVCHDSDQAQFH 336
            P P Q   S+ H L   H  +H ++  + H  +QQ   H + Q   H
Sbjct: 1439 PPPQQHSSSLQHHLQ-HHTSTHQMMDTSQHQTIQQQSNHPTQQQLQH 1484


>Z83319-4|CAB05909.1|  734|Caenorhabditis elegans Hypothetical
           protein T02D1.5 protein.
          Length = 734

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 287 LLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQGAPKS 412
           +LNS  + +P  D     + L  S G+HV++ G  P G  KS
Sbjct: 469 ILNSVPIVTPNGDVVVKNMTLTISPGMHVLITG--PNGCGKS 508


>Z70782-3|CAA94841.1|  347|Caenorhabditis elegans Hypothetical
           protein R04B5.5 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 491 LSKXPPRPPQFCQSVVHQLY*VHVGSHFLVRPAVHSLLQQHVCHDSD 351
           ++  P  P + C+      Y +     F   P VH  L + V HD+D
Sbjct: 88  IAMEPGLPCKLCEHCKTGRYNLCPEMRFFATPPVHGTLSRFVVHDAD 134


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 476  PRPPQFCQSVVHQLY*VHVGSHFLVRPAVHSLLQQHVCHDSDQAQFH 336
            P P Q   S+ H L   H  +H ++  + H  +QQ   H + Q   H
Sbjct: 1439 PPPQQHSSSLQHHLQ-HHTSTHQMMDTSQHQTIQQQSNHPTQQQLQH 1484


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 53  KERYASRKNVSVRSKKREKKDPEQIEKVILE 145
           +ER  SRK+   RS+ R K   E+IEK  LE
Sbjct: 88  QERRRSRKSRKSRSRSRLKHREEKIEKKNLE 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,603,313
Number of Sequences: 27780
Number of extensions: 253662
Number of successful extensions: 720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)