Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0476
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72090.1 68414.m08333 radical SAM domain-containing protein /... 148 2e-36
At4g36390.1 68417.m05170 radical SAM domain-containing protein /... 43 1e-04
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi... 28 3.0
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 28 3.9
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 28 3.9
At5g51430.1 68418.m06376 conserved oligomeric Golgi complex comp... 27 6.9
At3g60660.1 68416.m06787 expressed protein 27 6.9
At1g59560.1 68414.m06698 expressed protein contains similarity t... 27 6.9
At5g28520.1 68418.m03472 jacalin lectin family protein similar t... 27 9.1
At3g23680.1 68416.m02977 F-box family protein-related contains T... 27 9.1
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu... 27 9.1
>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
TRAM domain-containing protein contains Pfam profiles
PF00919: UPF0004 family protein, PF04055: radical SAM
domain protein, PF01938: TRAM domain
Length = 601
Score = 148 bits (359), Expect = 2e-36
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 6/144 (4%)
Frame = +2
Query: 77 NVSVRSKKREKKDPEQIEKVILESV------VPGTQTIYVKTWGCAHNNSDSEYMAGLLA 238
N KR P+QI +S+ +PGTQTIY+KT+GC+HN SDSEYMAG L+
Sbjct: 29 NPKTNKSKRISSKPDQITASNRDSLAPPSMKIPGTQTIYIKTFGCSHNQSDSEYMAGQLS 88
Query: 239 ANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRGIHVVVAGCVPQGAPKSGY 418
A GY LTE +A LWL+N+CTVKSP++ I G+S +V+AGCVPQG+
Sbjct: 89 AFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLITRGRSGKKPLVIAGCVPQGSRDLKE 148
Query: 419 LHGLSIVGVQQIDRIVEVVEXTLK 490
L G+S+VGVQQIDR+VE+VE TLK
Sbjct: 149 LEGVSVVGVQQIDRVVEIVEETLK 172
>At4g36390.1 68417.m05170 radical SAM domain-containing protein /
TRAM domain-containing protein similar to CDK5
activator-binding protein [Rattus norvegicus]
GI:7330738; contains Pfam profiles PF00919: UPF0004
family protein, PF01938: TRAM domain, PF04055: radical
SAM domain protein
Length = 640
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +2
Query: 116 PEQIEKVILESVVPGTQTIYVKTWGCAHNNSDSEYMAGLLAANGYK-LTEDKWDAQLWLL 292
PE + L+S + IY +T+GC N +D E + ++ +GYK + D A++ +
Sbjct: 113 PETESESTLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFV 172
Query: 293 NSCTVKSPAE 322
N+C ++ AE
Sbjct: 173 NTCAIRENAE 182
>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
protein associated factor (GI:2827282) [Homo sapiens];
similar to Transcription initiation factor TFIID 150 kDa
subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
[Drosophila melanogaster]
Length = 1390
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 53 KERYASRKNVSVRSKKREKKDPEQIEK 133
+++YAS + +S+ +K +KKD E+ EK
Sbjct: 1274 QQKYASLQTLSIGKEKEKKKDKEKKEK 1300
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 203 NSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIEL-GQSRGIH 370
N D +AG + G +D++D LW S T ++P F+++ ++ G G+H
Sbjct: 643 NEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGFQLFRSDADVSGGLVGLH 699
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 203 NSDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIEL-GQSRGIH 370
N D +AG + G +D++D LW S T ++P F+++ ++ G G+H
Sbjct: 643 NEDPHSIAGGSSGLGLFNDDDEFDTPLWSFPSETPEAPGFQLFRSDADVSGGLVGLH 699
>At5g51430.1 68418.m06376 conserved oligomeric Golgi complex
component-related / COG complex component-related
contains weak similarity to Conserved oligomeric Golgi
complex component 7 (Swiss-Prot:P83436) [Homo sapiens]
Length = 836
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +2
Query: 257 TEDKWDAQLWLLNSCTVKSPAEDHFKNEIEL 349
+++K+DA+ W+ +SC + P + K+ ++L
Sbjct: 9 SDEKFDAKRWVNSSCQARHPQDSLEKHLVDL 39
>At3g60660.1 68416.m06787 expressed protein
Length = 272
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 206 SDSEYMAGLLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIEL 349
S +E A L+AA+ KL E+ W+ L L + T ++ HF E ++
Sbjct: 184 SYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDM 231
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 413 GYLHGLSIVGVQQIDRIVEV 472
GYL G I+GV+ ++R+V +
Sbjct: 154 GYLKGFKILGVRHVERVVPI 173
>At5g28520.1 68418.m03472 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 451
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 311 SPAEDHFKNEIELGQSRGIHVVVAGCVPQGAPKSGYLHGLS 433
S D+ + G GI V V G P++G +HGLS
Sbjct: 17 SSDHDNVTKILVRGGREGIQYVKFDYVKSGQPQTGLIHGLS 57
>At3g23680.1 68416.m02977 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 235
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -3
Query: 445 YTNYTESM*VATFWCALRYTACYNNMYATTLTKLNFILE 329
Y N E T+WCA + N ++A L +F E
Sbjct: 28 YYNAHEKQFFCTYWCAAKRNVDVNEVFANRLICFDFTSE 66
>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to
anaphase-promoting complex subunit 2 GI:6180009 from
[Homo sapiens]
Length = 865
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 230 LLAANGYKLTEDKWDAQLWLLNSCTVKSPAEDHFKNEIELGQSRG 364
L+A G L ED++ + ++ L + S DHF +E +G
Sbjct: 39 LIAGTGDSLVEDEFVSHVYCLCKYGLDSLVRDHFLRSLEQAFEKG 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,779,457
Number of Sequences: 28952
Number of extensions: 224331
Number of successful extensions: 542
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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