Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0474
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   2.7  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.8  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   6.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   8.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.4  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 678 QNRVAVYVCMYIIFCVRVYVAFVCVWMCVL 589
           Q R A+++  Y ++CV  +V+ +C   C+L
Sbjct: 21  QWRGAIFLVCYPLYCVVCFVSVLCRLYCIL 50


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   FVLKADNNMEYVIEASDVDDMKSWLATIKY 91
           F +K  N   +V   ++VD++  WL  I +
Sbjct: 645 FSVKQKNQRTHVFSVTNVDELNDWLVKINF 674


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 313 WMLPRQAE*NETWGVRAHVQ 372
           W+ P +A+ NETW    H+Q
Sbjct: 151 WVAPDKAKLNETWKCYLHIQ 170


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 392  HLRMTVSEGGQCRVQHLWFPNVLDMLEHF 478
            HL    S G Q  V+ LW P +L   +HF
Sbjct: 1193 HLLSINSHGKQSVVEDLWNPLILKFSKHF 1221


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 32  YVIEASDVDDMKSWLATIKYCMRSPPTAQPP 124
           +V+ A DV+D KSWL  I   +R  P +  P
Sbjct: 814 HVLLARDVEDQKSWLRAI---LRQVPGSTSP 841


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 229 LGGTFLSDRSQLRLRA 182
           LG TFL+DR +L LRA
Sbjct: 329 LGNTFLTDRVELMLRA 344


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 LVLAGGHSAHGCYLVRQSETRRGEY 358
           LV A  ++ +GCYLV  S T +G +
Sbjct: 26  LVAADMNTQYGCYLVDSSLTEQGTF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,871
Number of Sequences: 5004
Number of extensions: 57065
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)