Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0474
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558...    31   0.71 
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    30   1.6  
05_02_0060 + 6236624-6237040                                           29   3.8  
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342...    29   5.0  
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261...    28   8.7  
01_01_1107 + 8756514-8756981                                           28   8.7  

>02_01_0753 -
           5586705-5586766,5587864-5588056,5588154-5588423,
           5588522-5588687,5589049-5589209,5590065-5590181,
           5590269-5590549,5590750-5590833,5591100-5592542,
           5593167-5593575
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +3

Query: 297 AGIRRMDVTSSGRVKRDVGSTCSRSISRAAQNTSA*PSAKVVSVEFSIYGSRTCSICSST 476
           + +R +  T+S    R VG+T S   +R+   T++  SA V S++ S   S   + CSS 
Sbjct: 170 SSMRSVGTTASSLSARSVGTTASSLSARSVGTTASSLSASVSSLDLSACPSMERASCSSM 229

Query: 477 SEFT 488
            + +
Sbjct: 230 DKLS 233


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 407 VSEGGQCRVQHLWFPNVLDMLEHFRVHAIPLESGGAADVTLAQYVV 544
           V+     R  HLWFP+V       R H      G A +V LA +VV
Sbjct: 485 VAAASSRRASHLWFPDVTGKRACLRAHG--AYGGRALEVLLAHHVV 528


>05_02_0060 + 6236624-6237040
          Length = 138

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 399 RRCFARPWKLNVSTYSPRL-VSLCLTR*HPCAECPPASTSAAALDRGRVPW 250
           R C+   ++L+V   +  L  S  L    P A  P AST   +  +GRVPW
Sbjct: 42  RYCYRANFQLSVRNAAALLCASAFLDMQPPLARWPDASTRPRSWRQGRVPW 92


>01_05_0511 -
           22831889-22832523,22833743-22833835,22834018-22834215,
           22834365-22834494,22834596-22834714,22835244-22835487,
           22835607-22835807
          Length = 539

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 364 EHVLPTSRFTLPDEVTSMRRMPASKHQRCSIRPRQGPMEPRPFR 233
           E  L  SR+  P  +TS   +P   H    + PR+ P  P P R
Sbjct: 483 ELALLRSRYQRPSLLTSPSSLPRQVHVADLVGPRRRPRSPSPAR 526


>05_01_0333 -
           2614123-2614202,2614466-2614553,2614644-2614721,
           2614795-2614887,2614982-2615101,2615685-2615726,
           2615822-2616091,2617188-2617339,2617771-2618233
          Length = 461

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -1

Query: 589 MSVPHLMLLVGSVWADDVLRKRDVSSATRLQRDGVN-SEVLEHI--EHVREP*MLNSTLT 419
           + +PH+ +++  +   D L   +VSS + +++ GV   ++++H+  E V +   L   L 
Sbjct: 327 LDLPHIEMILRKIHICDGLIVEEVSSGSTIEKLGVRVGDIIQHLNGEWVSDTIQLEEMLL 386

Query: 418 TFADGH 401
             ++ H
Sbjct: 387 RLSEDH 392


>01_01_1107 + 8756514-8756981
          Length = 155

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 303 IRRMDVTSSGRVKRDVGSTCSRSISRAAQNTSA*PSAKVVSVEFSI 440
           +R +  + SGR + + G +CSR    A +   A P+AKV +V  ++
Sbjct: 94  LRIVGPSGSGRARDNDGGSCSRVGCAADKGEEARPAAKVGAVRGAV 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,546,204
Number of Sequences: 37544
Number of extensions: 491985
Number of successful extensions: 1468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)