Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0473
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) 79 6e-22
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_49778| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17) 31 1.1
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11) 30 2.0
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_58558| Best HMM Match : EGF (HMM E-Value=0) 29 4.6
SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12) 29 4.6
SB_5514| Best HMM Match : TB (HMM E-Value=4.3) 29 4.6
SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11) 28 6.1
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 6.1
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 28 8.0
SB_53555| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_36282| Best HMM Match : HHH (HMM E-Value=7.4) 28 8.0
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 8.0
>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
Length = 368
Score = 79.4 bits (187), Expect(2) = 6e-22
Identities = 34/55 (61%), Positives = 47/55 (85%)
Frame = +3
Query: 309 KVSGHKGPEELSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQ 473
+V+ H+GP++L AA++ VV IPAGVPRKPGMTRDDLFNTNASIV++++ + A+
Sbjct: 55 QVTSHQGPDDLKAALEGCSVVAIPAGVPRKPGMTRDDLFNTNASIVKNLSEACAK 109
Score = 42.7 bits (96), Expect(2) = 6e-22
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 576 RVLGVTTLDVVRAATFVGEINGVDPTSVAVP 668
++LGVTTLD+VRA TFV E G+D ++ +P
Sbjct: 109 KILGVTTLDIVRAHTFVAEAKGLDVNNIKIP 139
>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -2
Query: 394 RGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFMWERSAATPGVTGAMS-YKASLVT 227
RG P+GM+TT++S ++D S L +T G + S+ TPG GA++ SLVT
Sbjct: 779 RGLPSGMSTTNSSTQSSDPS--VLGSVTSVGNLV--TSSLTPGFLGALAELVRSLVT 831
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 584 RRHHSGRSPRCHLRRRDQWRGPDLRRRAPS 673
RR+ GRSP RRR + R P RRR+PS
Sbjct: 105 RRYGGGRSPSPRGRRRSRSRSPVRRRRSPS 134
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +2
Query: 554 GGSVRPEPRARRHHSGRSPRCHLRRRDQWRGPDLRRRAPS 673
GG P PR RR RSP +RRR R P L RR+ S
Sbjct: 108 GGGRSPSPRGRRRSRSRSP---VRRR---RSPSLERRSRS 141
>SB_49778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -1
Query: 659 DGGRVHAIDLADEGGSADYVQSGDAEHAVRVVHSRLLEHFRGNRHCRV-NRVCDDGH-NS 486
DG + D G D+ + D H H ++ +H + H ++ +++ DDG
Sbjct: 20 DGKMTDHGKMTDHGKMTDHGKMTD--HGKMTDHGKMTDHGKMTDHSKMTDQMIDDGKMTD 77
Query: 485 FGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDY 369
G + +G+ +TD+G ++ +T HS+ T ++ D+
Sbjct: 78 HGKMTDHGK--MTDHGKMTDHGKMTDHSKMTDHNKMTDH 114
>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
Length = 714
Score = 30.7 bits (66), Expect = 1.1
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +3
Query: 201 ALLLKQNPLVTRLALYDIAPVT-PGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVI 377
A ++ +P VT L + A T GV L+ +TP + PE+ +D DV+VI
Sbjct: 563 AQVIASSPNVTVLVKDEPADATRDGVKRPLTDTSTPTQP-----PEKKGRPNQDNDVIVI 617
Query: 378 PAGVPRKPGMTRDDLFN-TNASIVRDIALSIAQNAPKAI 491
P KP +L N + +IV++I+ ++ KA+
Sbjct: 618 DPPSPPKPRTIPSELANGLDKAIVKEISDMNDEDLLKAV 656
>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
Length = 462
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 342 SAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNA-PKAIVAIITNPVN 518
+ A KDA VVV+ G G + + ++A + RD ++ +A P V P N
Sbjct: 202 AVAFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAHAKPDCKVLTAGGPAN 261
Query: 519 STVPIASE 542
+ IAS+
Sbjct: 262 FSTFIASK 269
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Frame = -1
Query: 524 CRVNRVCDDGHNSFGCILSNGQS----NVTDNGSISVE*V--ITGHSRFTGYSC 381
C + C DG NS+ C + G + NVT N IS + T H GYSC
Sbjct: 674 CSEHGACIDGVNSYTCACNLGYTGSTCNVTVNDCISNPCIHGATCHDGLLGYSC 727
>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -1
Query: 524 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 366
CR N C D HN++ C + G V N I++ I + G+ C D N
Sbjct: 168 CRNNGTCTDMHNAYRCQCTQG--FVGKNCQININDCIPDPCQNGGWCCCDLVN 218
>SB_58408| Best HMM Match : Methyltransf_2 (HMM E-Value=3.7e-12)
Length = 440
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -1
Query: 674 MTGHGD-GGRVHAIDLADEGGSADYVQSGDAEHAVRVVHSRLLEHFRGNRHCRVNRVCDD 498
+T GD G V+ +A +++S E AV L E HCRV R
Sbjct: 54 VTRSGDKGNSVNIGVIARHPSYVPFLRSALTEEAVEEYFKHLFETKPQKGHCRVKRYELP 113
Query: 497 GHNSFGCILSN 465
G N+F IL +
Sbjct: 114 GINAFNFILED 124
>SB_5514| Best HMM Match : TB (HMM E-Value=4.3)
Length = 243
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 607 SALPPSSARSMAWTRPPSPCPVI 675
++LPPS+ R + PP CPVI
Sbjct: 110 ASLPPSTTRDICGAIPPELCPVI 132
>SB_29302| Best HMM Match : LRR_1 (HMM E-Value=1.1e-11)
Length = 606
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 249 DIAPVT--PGVAADLSHMNTPAKVSGHKGPEELSAAIKDADVVVIPAGVP 392
D +PVT PG++++ + P K P E S A D IP P
Sbjct: 555 DSSPVTTQPGLSSEKPEASEPEPAPEPKSPAENSTASNDTSTTAIPLPPP 604
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 587 RHHSGRSPRCHLRRRDQWRG 646
R H+ R H+RRR WRG
Sbjct: 2232 RWHAAHRARLHIRRRGHWRG 2251
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +2
Query: 557 GSVRPEPRARRHHSGRSPRCHLRRRDQWRGPDLRRRAPSSA 679
GS R E R RRHH G + R + R+ RG RR P A
Sbjct: 134 GSQRGE-RERRHHPGVAIRRYRTRQVSQRGERERRHHPEVA 173
>SB_53555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 680 PPMTGHGDGGRV-HAIDLADEGGSADYVQSGDAEHAVRVVHS 558
P G GD G+ HA +LAD+GGS D G +HA + S
Sbjct: 116 PDGGGSGDLGKDDHARELADDGGSGDL---GKDDHARELADS 154
>SB_36282| Best HMM Match : HHH (HMM E-Value=7.4)
Length = 152
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = -2
Query: 556 AFLSTSEAIGTVELTGFVMMATIALGAF*AMDKAMSRTMEALVLNRSSRVIPGLRGTPAG 377
AF ++ V+ T F ++ATI GAF + + ++ + + + + ++P
Sbjct: 74 AFWPEYDSKPPVKFTDFQILATIGKGAFGHVLQVQHKSTDEVFAMKHNEILP---SALCD 130
Query: 376 MTTTSASLMAADSSSGP 326
+ S++ +D SGP
Sbjct: 131 LKQVGLSILQSDRKSGP 147
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 566 RPEPRARRHHSGRSPRCHLRRRDQWRGP--DLRRRAPSS 676
RP PR GRS R R + R P D RRAP S
Sbjct: 1532 RPRPRLEPADRGRSQRSDRRSLESERKPLRDSERRAPDS 1570
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -1
Query: 524 CRVNRVCDDGHNSFGCILSNGQSNVTDNGSISVE*VITGHSRFTGYSCWDDYN 366
C C DG N F C+ + G + + +I + +G G +C D N
Sbjct: 636 CAGTGTCKDGINDFSCVCNTGYTGAKCDSNID-DCAASGQPCQNGATCKDGVN 687
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,697,007
Number of Sequences: 59808
Number of extensions: 553543
Number of successful extensions: 1744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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