Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0473
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   241   3e-64
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    34   0.082
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    33   0.25 
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    31   0.58 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     29   4.1  
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  241 bits (590), Expect = 3e-64
 Identities = 117/161 (72%), Positives = 136/161 (84%)
 Frame = +3

Query: 186 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHKGPEELSAAIKDAD 365
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98

Query: 366 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEV 545
           V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A  IA+ +PKA++AIITNPVNSTVPIASEV
Sbjct: 99  VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEV 158

Query: 546 LKKAGVYDPNRVLGVTTLDVVRAATFVGEINGVDPTSVAVP 668
           LKKAGVYDP RV GVTTLDVVR+  FV E+ G D +   VP
Sbjct: 159 LKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVP 199


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 34.3 bits (75), Expect = 0.082
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 115 FCTARAAGFRARENIFVVC-LTCIYVYI*TIST*PSRP 5
           FC+ R   F  R  +F+ C LTC+Y  +  IST P+ P
Sbjct: 320 FCSKRIKNFGMRPTMFIGCFLTCLYCALVVISTPPTAP 357


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 560 SVRPEPRARRHHSGRSPRCHLRRRDQWRGPDLRRRAPSSA 679
           ++R +  ARR +S   PR H R R   R P  RRR  SS+
Sbjct: 509 NLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSS 548


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 560 SVRPEPRARRHHSGRSPRCHLRRRDQWRGPDLRRRAPSSA 679
           ++R +  ARR +S   PR H R R   R P  RRR  SS+
Sbjct: 509 NLREDSEARRSNSRSPPRDHKRSRSPSRSPSPRRRQRSSS 548


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 216  QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 383
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 384  GV 389
             V
Sbjct: 1040 HV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 216  QNPLVT-RLALYDIAPVTPGVAADLSHMNTPAKVS---GHKGPEELSAAIKDADVVVIPA 383
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 384  GV 389
             V
Sbjct: 1040 HV 1041


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 336 PQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 199
           P V C     +GCSC KG LR R  Q    + P   P   ++ E P
Sbjct: 187 PLVNCMEKCDIGCSCKKGFLRNRQGQC---VNPTECPATGSTDENP 229


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/73 (19%), Positives = 38/73 (52%)
 Frame = +3

Query: 423 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLD 602
           FN+  S++ +  +++A N+P A  + ++  +++ + +A+   K++   DP   + +  L 
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNLP 186

Query: 603 VVRAATFVGEING 641
            +      G++ G
Sbjct: 187 GLNVEN-AGDLEG 198


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 153 SSSVMWWKSSLHHFVQQGRQV 91
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/73 (19%), Positives = 38/73 (52%)
 Frame = +3

Query: 423 FNTNASIVRDIALSIAQNAPKAIVAIITNPVNSTVPIASEVLKKAGVYDPNRVLGVTTLD 602
           FN+  S++ +  +++A N+P A  + ++  +++ + +A+   K++   DP   + +  L 
Sbjct: 129 FNSKLSLITESTIAVAANSPDA--STVSKIIDNRLIVAASATKESPYRDPFPAVAIRNLP 186

Query: 603 VVRAATFVGEING 641
            +      G++ G
Sbjct: 187 GLNVEN-AGDLEG 198


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 339 APQVPCGR*PWLGCSCGKGRLRRRGSQALCRIKPAWSPEDSASVEGP 199
           APQV C     +GCSC  G +  R +Q +C +K A  P   ++ E P
Sbjct: 122 APQVNCLMACQVGCSCMDGFV--RNNQGVC-VKEAECPAIGSTDENP 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,521
Number of Sequences: 27780
Number of extensions: 394738
Number of successful extensions: 1175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)