Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0472
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 93 5e-20
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 7e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.025
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 34 0.025
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.033
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.033
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.058
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.058
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.076
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.10
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.18
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 31 0.18
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 30 0.31
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 30 0.41
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 30 0.41
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 30 0.41
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 30 0.41
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 28 1.2
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 28 1.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 28 1.2
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 28 1.2
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 28 1.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.2
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 27 2.2
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.2
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 26 5.0
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 26 5.0
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 5.0
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.8
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 8.8
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 92.7 bits (220), Expect = 5e-20
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Frame = +1
Query: 193 GYENVVVVDGCPQVGPERLEKL-QSVINKIFSKFGKIVNE--YYPTTE-NG--LTTGYIF 354
GY+ VVV++G P V + + + + +K+ +K GK+ Y P E NG ++ G +F
Sbjct: 36 GYDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEKNGKKMSLGLVF 95
Query: 355 LEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQ 534
++ N A V+ + ++ K HTF+V +K P E+ + FK + L+
Sbjct: 96 ADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEERE-FKEREHLR 154
Query: 535 WYLMDPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLGTYLATFPL 714
+L D DQF+ G V++ W P + +R NWTETY WSP+GTYL + L
Sbjct: 155 SWLTDYYGRDQFISYYGNRVSVN-WNRKSDVPEQIVDRENWTETYVQWSPMGTYLVSLHL 213
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Frame = +1
Query: 268 INKIFSKFGKIVN---EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
+ ++FSKFG+I + YP+TE ++ GY F+ +S+P A +A+ N K+ F+
Sbjct: 437 LEELFSKFGRIKSCTLASYPSTE--ISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENG-LTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
I +IF +G I + + P + L GY ++EY AA AV NN +LD + F+
Sbjct: 115 IAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.025
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 241 ERLEKLQSVINKIFSKFGKIVNEYYP----TTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
+ E + + FS +G +++ P T +GL TG +F+ YS+ ++A A++
Sbjct: 435 QEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFVRYSDIRSAEVAMEEMKG 494
Query: 409 CKLD 420
CK +
Sbjct: 495 CKFN 498
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTF 435
++ I ++++ GK V + G+ GY F+E+++P A+ A+ N H F
Sbjct: 106 EAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLF 165
Query: 436 LVN 444
+N
Sbjct: 166 KLN 168
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.033
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 280 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
FSKFGK+ PT G G+ F+ + + A EA+ + N ++D
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEID 174
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.5 bits (73), Expect = 0.033
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+S++ F FG+I++ E + Y F+E+ P++A EA++ N
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.058
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 181 KESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFL 357
K +GY +++V G V PE E+ + +F+ FG + N + G GY +
Sbjct: 5 KSVEGY--IIIVTG---VHPEATEEQ---VEDLFADFGPVKNLHLNLDRRTGYVKGYALI 56
Query: 358 EYSNPQNAAEAVKATNNCKLDKQ 426
EY+ + A +AV N LD++
Sbjct: 57 EYATLEQAQKAVDEKNLSLLDEK 79
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.7 bits (71), Expect = 0.058
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 232 VGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
VG E + + IF + G + + + E+G GY F EY +P AA AV+ NN
Sbjct: 9 VGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNN 68
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.076
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 277 IFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
IFS+FGKI++ + E G + Y F+E+ N ++ +A N +D
Sbjct: 263 IFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.10
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVNE-YYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
+ V+ FS G++V ENG + GY F+ Y + + A A++A NN
Sbjct: 112 ERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 414
+ + + G ++N NGL+ G +EYS + A A+K +N K
Sbjct: 82 LKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQK 130
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
++ FS FGKI++ E G GY F+ + + ++A A++ N L+ + ++
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/81 (19%), Positives = 38/81 (46%)
Frame = +1
Query: 250 EKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 429
E + + +F +FG+I + +N G+ F+ Y+N + A +AV N+ + +
Sbjct: 271 EITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKK 330
Query: 430 TFLVNLFTDFQKYSDIPKEWE 492
++ ++ ++ K +E
Sbjct: 331 LYVGRAQKKHEREEELRKRYE 351
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 376 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 474
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 376 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 474
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 62
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 547 DPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLGTY 696
DP D+ L+ + G ++ W +P+ E N+ YA WSP G Y
Sbjct: 78 DPTHSDR-LMAVYAGKMIRFWDFRSAKPIAEIES-NYENIYATWSPSGNY 125
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 376 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 474
N + K N K DK FL NLFT+F K+ D
Sbjct: 50 NIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHD 82
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 376 NAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSD 474
N + K N K DK FL NLFT+F K+ D
Sbjct: 30 NIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHD 62
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N +F++F K N YYP
Sbjct: 71 KTNKIKEFLNDLFTEFSKFHNSYYP 95
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = -3
Query: 150 FFFRNLYEILWVVKIRFFFKVLFLIV 73
FFFRNL++I++V+ + + +F+I+
Sbjct: 1022 FFFRNLFQIVFVLAVICYSSPMFMIL 1047
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = +1
Query: 511 FKVQSDLQWYLMDPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLG 690
+K ++D+ +++ D+F++ GT +W E+ W+E ++W
Sbjct: 479 YKYETDISHVILEYFD-DKFVLPNGTIETSAIWDRRARARRAAMEKYLWSEADSMWYDYN 537
Query: 691 TYLATFPLARCSTMGWS 741
T L T +T W+
Sbjct: 538 TKLETKSTYESATAFWA 554
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 196 YENVVVVDGC--PQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSN 369
++ +V++ C P+ +L+K ++ +NK +F ++ Y TE + + FLEY +
Sbjct: 784 FQTMVILLDCLDPKDPTIKLQKQKACLNKYKEEFADVIFFYLVDTEQYASLLHDFLEYQS 843
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 361 YSNPQNAAEAVKATNNCKL--DKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSD 528
Y N + V C++ +K + LF+D ++YS PP P P +V+SD
Sbjct: 190 YKNIKRWMRVVSDRPACRIAAEKVEDNTLTLFSDVERYS------HPPTPPPEQVRSD 241
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEYYP 318
+ K++ +N F++F K N YYP
Sbjct: 71 KTNKIKEFLNDPFTEFSKFHNSYYP 95
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 297 FTEFTKYFVYNAL*FLKTLGADLRTPVYDYNVFITVRFLRL 175
F E KY +Y ++ +K + D T V Y VRF RL
Sbjct: 329 FDESEKYLLYGSIVGIKVVSIDNGTVVRIYGKDEAVRFTRL 369
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 280 FSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQ 375
F + G++ + PT + +G GY F+E+ NP+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPK 144
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 631 LLLQERPNWTETYAVWSPLGTYLA 702
+L Q+ +WT + A WSP G L+
Sbjct: 161 MLGQDNEHWTISLAEWSPTGHQLS 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,394
Number of Sequences: 5004
Number of extensions: 71571
Number of successful extensions: 249
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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