Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0472
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.) 218 5e-57
SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 39 0.005
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.035
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 35 0.082
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.76
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 1.0
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 30 2.3
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_25062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013) 28 7.1
SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 28 7.1
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 28 7.1
SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 9.4
>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 218 bits (532), Expect = 5e-57
Identities = 101/186 (54%), Positives = 130/186 (69%)
Frame = +1
Query: 151 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 330
LL DIL QKP E++G + ++VVD P+VGPER+EKL++VI K+FSKFG+IV E+YP E
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGPERVEKLKNVIRKVFSKFGQIVTEHYPM-EK 113
Query: 331 GLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQP 510
LT GYIFLE+SN +A AVK N KLDK H F VN F DF K + +EW+ P QP
Sbjct: 114 DLTRGYIFLEFSNASDAVRAVKTANGYKLDKHHIFAVNHFEDFNKLLSLKEEWQEPTKQP 173
Query: 511 FKVQSDLQWYLMDPDAYDQFLVGIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLG 690
++ Q +L+ +L+DPD DQ+ V G L ++ N EP+L++ER NWTE YA WSP G
Sbjct: 174 YEQQENLRSWLLDPDCNDQYSVIHSAGDKLSIFSNTPQEPILVRERDNWTEMYAQWSPKG 233
Query: 691 TYLATF 708
TYLATF
Sbjct: 234 TYLATF 239
>SB_29106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = +1
Query: 151 LLADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTEN 330
LL DIL QKP E++G + ++VVD P+VGPER+EKL++VI K+FSKFG+IV E+YP E
Sbjct: 55 LLGDILRQKPSETEGTDCIIVVDNVPKVGPERVEKLKNVIRKVFSKFGQIVTEHYP-MEK 113
Query: 331 GLT 339
LT
Sbjct: 114 DLT 116
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 157 ADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVN-EYYPTTENG 333
A ++EQ +E+ Y + + V P+ LE I +F FGK+V+ G
Sbjct: 185 APLIEQFEQEAKKYARIYIAS----VHPDLLE---DDIKSVFEAFGKVVHCSLSKEPMTG 237
Query: 334 LTTGYIFLEYSNPQNAAEAVKATN 405
GY F+EY N Q+A +A+ + N
Sbjct: 238 KHKGYGFIEYENQQSANDAIASMN 261
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.027
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 426
Q I KIF G + + + G + GY F+ Y NP +A +AV+ N +L +
Sbjct: 40 QEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNK 96
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 35.9 bits (79), Expect = 0.035
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
+S I ++FSK G + T G GY ++EY +A+ AV + ++ K T
Sbjct: 184 ESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLDKTEV-KGRTIS 242
Query: 439 VNLFTDFQKYSDIPKEWEPPAPQP 510
V L + P++ PP P P
Sbjct: 243 VALSNPPTRRGP-PRQEHPPPPPP 265
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATN 405
+ K+FS+FGK++ P + NG G+ F+E+ + Q A V+ N
Sbjct: 104 LKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 334 LTTGYIFLEYSNPQNAAEAVKATNNCKL 417
L T Y F+EY +P++A EA++ NN KL
Sbjct: 37 LKTAYGFIEYEDPRDAEEAMRRENNRKL 64
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+ +I ++ GKIV+ T G + G+ F+ + P+ A EAV N
Sbjct: 125 MKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 154 LADILEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVN-EYYPTTEN 330
LA I + + K+S G + + VG E + + +IFS+ G +++ E
Sbjct: 5 LAXIAQAQQKQSSGAADRSLRSVF--VGNIPYEASEEQLKEIFSEVGPVISFRLVFDRET 62
Query: 331 GLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
G GY F EY + + A A++ N +L+
Sbjct: 63 GKPKGYGFCEYKDQETALSAMRNLNGYELN 92
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 250 EKLQSVINKIFSKFGKIVNEYYPTTEN-GLTTGYIFLEYSNPQNAAEAVKATNNCKL 417
E + I+++FS +G+I N + G GY +EY + A A++A N ++
Sbjct: 303 EAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEM 359
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKL 417
+++I ++F + G +VN + P L GY F+E+ ++A A+K N K+
Sbjct: 26 EALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKV 79
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 670 HRFRSSLVSPVTVGVQVMHSATPGEPHQSQ-CQQGTG 563
H R+S +SPVT + ++ A PGE + Q CQ+ G
Sbjct: 295 HPSRTSAMSPVTSSLSIICKAKPGEGVEDQFCQKECG 331
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 307 EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
E ++ G G+ F+E++N + A A++ATNN
Sbjct: 613 ERLDSSGKGRPLGFAFVEFTNHKEALAALRATNN 646
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 328 NGLTTGYIFLEYSNPQNAAEAVKATNN 408
+GLT G+ F +SN A AVK +N
Sbjct: 189 SGLTKGFAFCTFSNKDEAQNAVKKLDN 215
>SB_25062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 721 TSPVEKLLSMFLKVTRRHRFRSSLVSPVTVGVQVMHSATPGEPHQSQCQQGTGHMHQDPL 542
T+ K S+ ++RRHR GV + PG + +Q TG++ +D L
Sbjct: 45 TAKYSKYNSLHRPISRRHRSWLGQPQECEDGVALSSILLPGNQMNCEYEQSTGNVSEDQL 104
>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 498
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 491 SHRHLNHSRCSQICNGI*WILMH--MTSSLLALGLVWLSR-CGRMHYLNPY 634
S R L++ S++CN + W+++H + +S L + SR C M + P+
Sbjct: 446 SSRGLSYITSSRMCNHMTWVMLHIGLITSSRGLSYITSSRMCNHMTWAMPH 496
>SB_36987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 378 ILWVTVFQENVPSRESILSRGVVFVDYFTEFTKYFVY 268
ILW T F+ ++P I V+FV +F VY
Sbjct: 295 ILWYTNFEHHLPLDVEIAGLAVIFVFFFAGVAMMVVY 331
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 256 VSQDARGRPADTRLRL-QRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVP 80
+S G A T LRL +R + ++P R+ P+ILL N +GR+ Q S +
Sbjct: 51 LSYAEEGSGAQTWLRLDKRVLDHELP-----RHDPLILLFAVRTNSIGRKQQPSASSMMV 105
Query: 79 HCHFEELDSLFHRLFS 32
H + +L ++S
Sbjct: 106 HVWYASTSTLAKAMWS 121
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 304 NEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
NE+Y E + G+ F+ ++NP++A AVK+ N
Sbjct: 88 NEFYQQQEPR-SRGFGFVTFANPEDAQTAVKSLN 120
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +1
Query: 487 WEPPAPQP---FKVQSDLQWYLMDP 552
W+PP P+P KV +D QWY + P
Sbjct: 58 WKPPTPRPRNWRKVLNDDQWYQLFP 82
>SB_2072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 KFGKIVNEYYPTTENGLTT-GYIFLEYSNPQNAAEAVKAT 402
K+ + +++ P +N T GY+F NP+ E+V AT
Sbjct: 27 KYLHVPSDFRPPKQNLSTRKGYVFTHIGNPETIEESVDAT 66
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
++ IF K+G I + G + F+E+ +P++A +AVK + + D
Sbjct: 277 LHDIFYKYGHIADVDLKN-RRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFD 326
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,077,176
Number of Sequences: 59808
Number of extensions: 523111
Number of successful extensions: 1342
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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