Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0472
(752 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 141 5e-34
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 136 1e-32
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 42 3e-04
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 39 0.003
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 36 0.022
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.029
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.088
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.12
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.15
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.36
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.62
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.62
At5g01920.1 68418.m00111 protein kinase family protein contains ... 31 0.82
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 31 1.1
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 30 1.4
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 30 1.9
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 30 1.9
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 30 1.9
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 30 1.9
At1g54430.1 68414.m06209 hypothetical protein 30 1.9
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 2.5
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 2.5
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 2.5
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 2.5
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 29 2.5
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 2.5
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 3.3
At5g51310.1 68418.m06361 gibberellin 20-oxidase-related low simi... 29 4.4
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 29 4.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 4.4
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot... 28 5.8
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 28 5.8
At1g09880.1 68414.m01112 hypothetical protein 28 5.8
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 28 7.7
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 141 bits (341), Expect = 5e-34
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Frame = +1
Query: 193 GYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEY 363
G+ N++VVD P V E+ EKL+ V+ KI+++ G I + P + +T GY F+E+
Sbjct: 53 GFGNIIVVDHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEF 112
Query: 364 SNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYL 543
+ PQ A A + ++ KLDK H F VN+F DF + ++ +EWEPP +P+ +LQ +L
Sbjct: 113 NTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQARPYVPGENLQKWL 172
Query: 544 MDPDAYDQFLV--GIGTGVALQVWQNALPEPLLLQERPNWTETYAVWSPLGTYLAT 705
D A DQ ++ G T V + PEP + +RP WTE+Y WSPLGTYL T
Sbjct: 173 TDEKARDQLVIRSGPDTEVFWNDTRQKAPEP--VHKRPYWTESYVQWSPLGTYLVT 226
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 136 bits (330), Expect = 1e-32
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 6/177 (3%)
Frame = +1
Query: 193 GYENVVVVDGCPQVGPERLEKLQSVINKIFSKFGKIVNE--YYPTT-ENGLTTGYIFLEY 363
G+ N++VVD P V E+ EKL+ V+ KI+++ G I P + +T GY F+E+
Sbjct: 54 GFGNIIVVDHLPVVPKEKFEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEF 113
Query: 364 SNPQNAAEAVKATNNCKLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYL 543
+ PQ A A + ++ KLDK H F VN+F DF + ++ +EWEPP +P+ +LQ +L
Sbjct: 114 NTPQEAQNAKEKSHGYKLDKSHIFAVNMFDDFDRLMNVKEEWEPPQERPYVPGENLQKWL 173
Query: 544 MDPDAYDQFLVGIGTGVALQVWQNA---LPEPLLLQERPNWTETYAVWSPLGTYLAT 705
D A DQ ++ G + W +A PEP + +R WTE+Y WSP+GTYL T
Sbjct: 174 TDDKARDQLVIRFGHDTEV-YWNDARQKKPEP--VHKRSYWTESYVQWSPIGTYLVT 227
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 259 QSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCK 414
+ ++ + F++FGKIV+ EN L GY F+ + NP++A A + N K
Sbjct: 214 EDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTK 265
Score = 35.5 bits (78), Expect = 0.038
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 262 SVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
+V+ +F KFG IV+ T E+G + GY F+++ A A++ N+
Sbjct: 126 AVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 447
I +F K+G +++ + G +F+E ++P+ AA A+K+ +C+ + + V+
Sbjct: 110 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRR-LKVDY 168
Query: 448 FTDFQKYSDIPKEWEPPAP 504
+K + P+E P P
Sbjct: 169 AKTKKKKTYAPRETPSPVP 187
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.3 bits (80), Expect = 0.022
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 447
+NK+F +FG + G + G+ F+ + N +AA AV A N D + F+
Sbjct: 240 LNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKA 299
Query: 448 FTDFQKYSDIPKEWE 492
++ +++ +++E
Sbjct: 300 QKKSERETELKQKFE 314
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+N++FS++G I + Y + + GY F+++S + A A+KA N
Sbjct: 223 VNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALN 268
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 34.3 bits (75), Expect = 0.088
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 250 EKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 429
E + + ++FS FG+I + P G GY F+E+ Q A A KA + +H
Sbjct: 679 EATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRH 738
Query: 430 TFL 438
L
Sbjct: 739 LVL 741
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 217 DGCPQVGPERLEKLQSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAV 393
D VG + + ++ ++F + G +VN Y P L Y F+EY + ++A A+
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 394 KATNNCKL 417
K N KL
Sbjct: 84 KVLNMIKL 91
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/81 (22%), Positives = 38/81 (46%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFLVNL 447
+ ++FS+FG I + NG++ G F+E+S + A++A+ N + + ++
Sbjct: 239 LEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 448 FTDFQKYSDIPKEWEPPAPQP 510
Q + ++ P P P
Sbjct: 299 QCKEQHKLHLQTQFNNPPPSP 319
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 277 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQH 429
+FS FGK+++ +G++ GY F+++ + + A N + QH
Sbjct: 50 MFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQH 100
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +1
Query: 232 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNC 411
VG + + + K+F FG + P E GL G+ F++++ ++A A+
Sbjct: 289 VGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQL 348
Query: 412 KL 417
++
Sbjct: 349 EI 350
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
++ +FS++G + + G + G+ F+ + NP+NA +A+++ +L + F+
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
+ +IF +G+IV+ ENG + G+ F+ +SN + + +A + N +D
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 EKLQSVINKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 426
E + I F FG+I N +G GY +EY + A A+ A N +L Q
Sbjct: 105 ETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQ 164
Query: 427 H 429
+
Sbjct: 165 N 165
>At5g01920.1 68418.m00111 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 495
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 475 IPKEWEPPAPQPFK-VQSDLQWYLMDPDAYDQFLVGI 582
+P+E P P+P + S + W L PD +D + GI
Sbjct: 358 LPEETPSPPPEPIAALLSPILWQLNSPDLFDMYSAGI 394
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 244 RLEKLQSVINKIFSKFGKIVNEY-YPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
+L++L+ +N +FS+FGKI+ + T ++ G ++ + N ++A+ A+ NN
Sbjct: 30 KLDELKKSLNAVFSQFGKILEILAFKTFKH---KGQAWVVFDNTESASTAIAKMNN 82
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 232 PADTRLRLQRFHNRQIP*ASVLRYPPIILLQESLRNPLGRQNQVLLQSSVPHCHFEELDS 53
P D RL++ +N Q P ++ PP+ + + NP L+Q+ V H L S
Sbjct: 58 PLDALSRLEKLNNEQEPQVEIIPNPPLEPVSYPVSNPTIVTRTDLVQNKVREHHRGVLSS 117
Query: 52 L 50
L
Sbjct: 118 L 118
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 277 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 277 IFSKFGKIVNEYYP-TTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
+F+K+GK+V+ + P G + G+ F+ Y A +AV+ + +D
Sbjct: 35 LFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVD 83
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +1
Query: 250 EKLQSVINKIFSKFGKIVNEYYPTTE-NGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQ 426
E +S I + F +G I + T + GY F+EY + ++ A K + K+D +
Sbjct: 148 ESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGR 207
Query: 427 HTFLVNLFTDFQKYSDIPKEWEP 495
+ D ++ +P W P
Sbjct: 208 -----RVLVDVERGRTVP-NWRP 224
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 430 TFLVNLFTDFQKYSDIPKEWEPPA 501
TFL++L TD + +IP W PP+
Sbjct: 438 TFLLDLTTDKPTWKEIPTSWAPPS 461
>At1g54430.1 68414.m06209 hypothetical protein
Length = 1639
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 698 KYVPKGDQTA*VSVQFGLSCNSRGSGNAF 612
KY+ KG A +Q G S N +GSGN F
Sbjct: 849 KYITKGVDKATFIIQKGNSVNGQGSGNGF 877
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 268 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 74 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 268 INKIFSKFGKIVN-EYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+ K+FS+FG++ N + + GY ++ +++ ++A AV+A N
Sbjct: 93 LKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 232 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
VG + + + +IF +FG + + Y E + G F++YS+ + A A+ N
Sbjct: 215 VGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 232 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
VG + + + +IF +FG + + Y E + G F++YS+ + A A+ N
Sbjct: 215 VGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
[Arabidopsis thaliana]
Length = 2603
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 166 LEQKPKESDGYENVVVVDGCPQVGPERLEKLQSVINK--IFSKFGKIVNEYYP 318
+ P + DGY NVV+ D C +V L+ L ++ N+ ++S G I + P
Sbjct: 1667 IRSDPSDDDGY-NVVIADNCQRVFVYGLKLLWTIENRDAVWSFVGGISKAFEP 1718
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 277 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
+F +V+ +N + GY ++ +SNP +A A++A N
Sbjct: 68 LFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 280 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
FS FG I++ G + GY F+++ ++A A+ N ++ + F+
Sbjct: 156 FSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 277 IFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAV 393
+FS FGK++ G + G+ F+E+ + +A A+
Sbjct: 36 MFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAM 74
>At5g51310.1 68418.m06361 gibberellin 20-oxidase-related low
similarity to GI:9791186, GI:1109695
Length = 333
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 169 EQKPKESDGYENVVVVDGCPQVGPERLEKL-QSVINKIFSKFGKIVNEYYPTTENGLTTG 345
+Q E Y ++ +DG + E++ KL + ++ I S FG ++ Y +E G G
Sbjct: 103 DQATDEEFRYIHIYDIDGLMKEYGEKMTKLCEKIMKAILSSFGDDLHHKYYESEFGNCHG 162
Query: 346 YIFL-EYSNPQN 378
Y + Y+ P +
Sbjct: 163 YFRINNYTIPSD 174
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 268 INKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLD 420
I ++FS+ G++ +NG +G + Y +A +A+K NN LD
Sbjct: 109 IRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLD 159
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 232 VGPERLEKLQSVINKIFSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNN 408
VG + S + ++FSKFG++ + +GY F+ + + ++A +A++ T+N
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVKRV-------DMKSGYAFVYFEDERDAEDAIRRTDN 57
>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
similar to serine-type carboxypeptidase (SP:P55748)
[Hordeum vulgare]
Length = 479
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 440 TKNVCCLSNLQLFVAFTASAAFCGLLYSRKMYPVVS 333
T+ CCL N + +AF A+A C S+K VS
Sbjct: 4 TRGSCCLVNALIAIAFLATAHLCEAGLSQKEQDKVS 39
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 265 VINKIFSKFGKI-VNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATN 405
V++K F++F + + G T GY F+ + NP + A A+K N
Sbjct: 152 VLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMN 199
>At1g09880.1 68414.m01112 hypothetical protein
Length = 631
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 412 KLDKQHTFLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDP 552
KL+K+ + + D Q+Y +P + PP QP +Q L+DP
Sbjct: 136 KLNKKKFHYMAISDDRQRYMPVPDDRVPPRGQPLAYPEAVQ--LLDP 180
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 280 FSKFGKIVNEYYPTTENGLTTGYIFLEYSNPQNAAEAVKATNNCKLDKQHTFL 438
FS FG I++ G + GY F+++ + A A+ N L+ + F+
Sbjct: 152 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,950
Number of Sequences: 28952
Number of extensions: 374909
Number of successful extensions: 1067
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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