Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0471
(654 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 454 e-127
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 227 2e-58
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 224 1e-57
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 220 3e-56
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 213 3e-54
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 213 4e-54
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 212 7e-54
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 211 1e-53
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 211 1e-53
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 210 2e-53
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 210 2e-53
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 210 2e-53
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 180 4e-44
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 115 1e-24
UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complet... 113 5e-24
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 110 3e-23
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 109 4e-23
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 109 8e-23
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 103 3e-21
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 97 2e-19
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 96 6e-19
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 96 7e-19
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 95 1e-18
UniRef50_Q66339 Cluster: Non-structural/coat protein fusion prod... 95 2e-18
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 95 2e-18
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 94 2e-18
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 94 3e-18
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 93 5e-18
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 91 2e-17
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 88 2e-16
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 88 2e-16
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 86 8e-16
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 85 1e-15
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 83 6e-15
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 83 7e-15
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 82 1e-14
UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia... 76 6e-13
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 75 2e-12
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 64 4e-09
UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mott... 61 2e-08
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 60 3e-08
UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra mo... 60 6e-08
UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara... 56 1e-06
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 53 5e-06
UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantag... 51 3e-05
UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic vi... 50 4e-05
UniRef50_Q3BDA0 Cluster: Putative movement protein; n=1; Scrophu... 50 5e-05
UniRef50_P35929 Cluster: Uncharacterized 48 kDa protein; n=2; Er... 48 2e-04
UniRef50_Q9QCX4 Cluster: Overlapping protein; n=1; Chayote mosai... 47 5e-04
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 46 8e-04
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 44 0.002
UniRef50_P20130 Cluster: 66 kDa protein; n=1; Ononis yellow mosa... 43 0.007
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 42 0.010
UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3; Xenopus|... 38 0.16
UniRef50_Q6FJT7 Cluster: Similar to sp|P48563 Saccharomyces cere... 38 0.28
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 37 0.37
UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3; Leishman... 36 0.64
UniRef50_A6SKK9 Cluster: Putative uncharacterized protein; n=2; ... 36 0.64
UniRef50_Q5FSM3 Cluster: NADPH-dependent L-sorbose reductase; n=... 36 0.85
UniRef50_P10357 Cluster: 69 kDa protein; n=5; Turnip yellow mosa... 36 0.85
UniRef50_Q8CFA1-2 Cluster: Isoform 2 of Q8CFA1 ; n=3; Murinae|Re... 35 2.0
UniRef50_A5TXZ4 Cluster: Dipeptide ABC superfamily ATP binding c... 34 2.6
UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 4.5
UniRef50_A7HN20 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_A7PYL4 Cluster: Chromosome chr12 scaffold_38, whole gen... 33 6.0
UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2; Cryptospo... 33 6.0
UniRef50_Q6FXI9 Cluster: Similar to sp|P39985 Saccharomyces cere... 33 6.0
UniRef50_UPI000150A116 Cluster: Cullin family protein; n=1; Tetr... 33 7.9
UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-leng... 33 7.9
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 7.9
UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila melanogaster... 33 7.9
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 454 bits (1120), Expect = e-127
Identities = 212/212 (100%), Positives = 212/212 (100%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY
Sbjct: 1 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP
Sbjct: 61 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV
Sbjct: 121 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP
Sbjct: 181 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 212
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 227 bits (555), Expect = 2e-58
Identities = 104/208 (50%), Positives = 142/208 (68%)
Frame = +1
Query: 31 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSP 210
++++TL++TIHRD I APL+ET S +R L+ +P+ V + +P L + GI V +G
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPWAVPASALPFLQECGITVAGHGFKA 85
Query: 211 HPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDIT 390
HPH HK IETHLL + W H A+VPS+V++MKP KF KLQ+ N NF++L N+R T KD
Sbjct: 86 HPHPVHKTIETHLLHKVWPHYAQVPSSVLFMKPSKFAKLQRGNANFSALHNYRLTAKDTP 145
Query: 391 RYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLF 570
RYP ++ +TE AFMHDALM+ TP+QI+ LF P + LY SL+VP E+++ SL
Sbjct: 146 RYPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLH 205
Query: 571 PDLYSYTIKDDQLVYTLEGNATGNYTQP 654
PDLY + D+L+Y LEGN NYTQP
Sbjct: 206 PDLYRFRFDGDRLIYELEGNPAHNYTQP 233
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 224 bits (548), Expect = 1e-57
Identities = 103/212 (48%), Positives = 138/212 (65%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF +D LA+T H+D P++E+ + LQ YP+ V L P L + GI + S+
Sbjct: 1 MAFQLALDALASTSHKDPSLHPVLESVHDSLTDSLQTYPWMVPQDLQPFLLKSGIPINSF 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
G+SPHPH AHK +ETHLLF HW HL PS+V++MKP+KF KLQ+ N F L N+R TP
Sbjct: 61 GSSPHPHPAHKTLETHLLFTHWMHLCTQPSSVLFMKPQKFMKLQRKNKFFQHLHNYRLTP 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
D R+P ++PH T FMHDALM+ P QIL LF P +T+L+CSL+ P E+ +
Sbjct: 121 TDSVRFPSTSPHLPNTPFVFMHDALMYYQPEQILHLFHQVPQLTNLFCSLVTPPESHFTH 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SL PDLY++T+K L YT EG++ G+Y QP
Sbjct: 181 LSLMPDLYTFTLKGQTLHYTPEGHSAGSYNQP 212
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 220 bits (537), Expect = 3e-56
Identities = 102/212 (48%), Positives = 138/212 (65%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF + ++ L +T HRDA T P++ + + R L LYP+ + + +P L GI +
Sbjct: 1 MAFQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPWLLPKEAVPHLLSWGIPNSGL 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
G +PHPH HK +ET LLF HW+ LAR+PSTVM+MKP KFQKL LNP F LINFR T
Sbjct: 61 GVTPHPHPIHKTVETFLLFNHWHALARLPSTVMFMKPSKFQKLAALNPKFQELINFRLTA 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
D TRYP ++ + FMHDALM+ +P+QI+ LF SP++ +LYCSLIVP E+ +
Sbjct: 121 ADTTRYPSTSLTFPSNSICFMHDALMYFSPAQIVDLFTQSPALETLYCSLIVPPESHFTD 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SLFP++Y+Y I L Y E + +G+Y QP
Sbjct: 181 LSLFPEIYTYKISGQTLHYIPENHHSGSYNQP 212
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 213 bits (520), Expect = 3e-54
Identities = 102/212 (48%), Positives = 130/212 (61%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF +D LA T HRD P++E+ + + R +Q YP+ + +L+PLLN GI +
Sbjct: 1 MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELLPLLNSYGIPTSGL 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
GTS HPHAAHK IET LL HW+ A PS+VM+MKP KF KL Q+N NF L N+R P
Sbjct: 61 GTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLAQVNSNFRELKNYRLHP 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
D TRYP ++P FMHDALM+ PSQI+ LF P++ LY SL+VP EA
Sbjct: 121 NDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLRKPNLERLYASLVVPPEAHLSD 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
S +P LY+YT L Y EG+ G+Y QP
Sbjct: 181 QSFYPKLYTYTTTRHTLHYVPEGHEAGSYNQP 212
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 213 bits (519), Expect = 4e-54
Identities = 102/213 (47%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF +D L++T HRD+I+APL+++++S + L+L+PY V +L+P LN++GI V+
Sbjct: 1 MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELVPQLNRMGIQVSGL 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
++PHPHAAHK +E +LLF HW V S V++MKP KF KLQ+ N +F SL N+R P
Sbjct: 61 TSTPHPHAAHKTLELNLLFNHWAKSCNVDSAVVFMKPSKFFKLQEKNSHFKSLHNYRLHP 120
Query: 379 KDITRYP-VSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYG 555
D RYP S P E ++HD+LM+ TP QI GLF+ P++ SLY SL+VP E++
Sbjct: 121 HDSNRYPHPSTSLPTEKRF-YIHDSLMYFTPHQISGLFESCPNLLSLYASLVVPPESSMT 179
Query: 556 VPSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SL PDLY Y+I L YT EG++ G+Y QP
Sbjct: 180 DLSLNPDLYRYSIHKSTLHYTPEGHSAGSYNQP 212
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 212 bits (517), Expect = 7e-54
Identities = 97/212 (45%), Positives = 135/212 (63%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF + + L++T+HRD + APL+E+ R L+LYP+ +N++ + LL + GI V+
Sbjct: 1 MAFQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAEKLDLLKKFGISVSGL 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
G HPH HK IETHLLF+HW+H R STV++MKPEKFQKL NP+F L+N+R
Sbjct: 61 GHQAHPHPFHKIIETHLLFQHWSHNCREDSTVLFMKPEKFQKLASFNPHFKHLLNYRLHA 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
KD TR+P + T FMHDAL + PSQI+ LF P++ SLY S++VPAE+++
Sbjct: 121 KDTTRFPETACSLPTTSTVFMHDALTYYKPSQIMDLFLRIPNLNSLYASVVVPAESSFTD 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SL+P++Y Y L Y E N + Y QP
Sbjct: 181 HSLYPEVYQYKTIRSHLHYVPESNHSSAYNQP 212
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 211 bits (516), Expect = 1e-53
Identities = 96/206 (46%), Positives = 132/206 (64%)
Frame = +1
Query: 37 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHP 216
V++L T HRD ITAP+VE+ + R L+ YP+ + + L+ G+ ++ +G + HP
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPWSIPKEFHSFLHTCGVDISGFGHAAHP 73
Query: 217 HAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRY 396
H HK IETHLL + W + AR PS VM++KPEKF KLQ PNFA LIN+R PKD TRY
Sbjct: 74 HPVHKTIETHLLLDVWPNYARGPSDVMFIKPEKFAKLQSRQPNFAHLINYRLVPKDTTRY 133
Query: 397 PVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPD 576
P ++ + + E FMHDALM+ TP QI LF P + +Y S++VPAE+++ SL P+
Sbjct: 134 PSTSTNLPDCETVFMHDALMYYTPGQIADLFFLCPQLQKIYASVVVPAESSFTHLSLHPE 193
Query: 577 LYSYTIKDDQLVYTLEGNATGNYTQP 654
+Y + + LVY EGN NYTQP
Sbjct: 194 IYRFRFQGSDLVYEPEGNPAANYTQP 219
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 211 bits (516), Expect = 1e-53
Identities = 94/212 (44%), Positives = 137/212 (64%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF + ++ L +T HRDA++ P++ + + + L+ YP+ + + +P LN GI +S+
Sbjct: 1 MAFQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPWLLPKEALPFLNNQGIPASSF 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
GT PHPH HK +ET LL +HW+ L PSTV++MKP KFQKLQ+ NPNF L N+R T
Sbjct: 61 GTMPHPHPIHKTLETFLLHQHWSFLCVTPSTVLFMKPSKFQKLQRKNPNFQELKNYRLTS 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
D RYP ++ TE FM DALM+ PSQI LF SP++ L+CSL++P E+++
Sbjct: 121 SDTVRYPTTSTTLPTTESVFMQDALMYFHPSQICDLFLKSPNIQKLFCSLVIPPESSFTD 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SL P++Y+Y I L Y E +++G+Y QP
Sbjct: 181 LSLHPEIYTYQISGQTLHYVPENHSSGSYNQP 212
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 210 bits (514), Expect = 2e-53
Identities = 98/207 (47%), Positives = 127/207 (61%)
Frame = +1
Query: 34 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPH 213
LV+ L T+HRD + +PLVE A R LQLYPY + + L GI + YG H
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPYDIPQEHAKFLQTCGIQASGYGYKTH 196
Query: 214 PHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITR 393
PH HK IE HLLFEHW L R PS+V++MKP KF KLQ N NFA L N+ +DITR
Sbjct: 197 PHPVHKTIEIHLLFEHWMGLCRQPSSVLFMKPSKFSKLQARNNNFAELCNYSLVARDITR 256
Query: 394 YPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFP 573
YP ++P P E FMHD++M+++ ++ G F+ P + LY SLIVP E+++ SL P
Sbjct: 257 YPETSPTPPECSTWFMHDSIMYLSAEEVAGCFQACPHLERLYASLIVPPESSFTDLSLNP 316
Query: 574 DLYSYTIKDDQLVYTLEGNATGNYTQP 654
LY Y DQL+Y LE N + +Y QP
Sbjct: 317 SLYRYRFHGDQLIYRLEENPSHSYQQP 343
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 210 bits (513), Expect = 2e-53
Identities = 100/204 (49%), Positives = 123/204 (60%)
Frame = +1
Query: 43 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHA 222
+LA T HRD I PL+E +R L YP+ + + L P L GI G HPH
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNLQPFLTSCGITTAGQGFKAHPHP 156
Query: 223 AHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPV 402
HK IET+LL W+H A PS VM+MKP KF+KL+ PNF+ L N+R T KD TRYP
Sbjct: 157 VHKTIETNLLSNVWSHYATTPSGVMFMKPSKFEKLRIKQPNFSKLYNYRITAKDSTRYPS 216
Query: 403 SNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLY 582
++P + FMHDALM+ +P QI LF PS+ LY SL+VP E+ + SLFPDLY
Sbjct: 217 TSPDLPTEDTCFMHDALMYYSPGQICDLFISRPSLQKLYASLVVPPESDFTTISLFPDLY 276
Query: 583 SYTIKDDQLVYTLEGNATGNYTQP 654
Y I+ DQLVY LE N NY QP
Sbjct: 277 RYRIEKDQLVYELEQNPAHNYIQP 300
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 210 bits (513), Expect = 2e-53
Identities = 95/212 (44%), Positives = 140/212 (66%)
Frame = +1
Query: 19 MAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
MAF ++ LA++ H+D+ P++ +A+ + LQ +P+ + + +P L GI + +
Sbjct: 1 MAFELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKEHLPFLLAAGIPTSGF 60
Query: 199 GTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
G +PHPHA HK IET LLF HW+ +A V ++VM+MKP KF+KL +NPNF+ L+N+R T
Sbjct: 61 GCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLASVNPNFSELVNYRLTA 120
Query: 379 KDITRYPVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGV 558
D RYP ++ + E+ FMHDALM+ PSQIL LF PS+ L+CSL+VP E+++
Sbjct: 121 ADSVRYPSTSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSLQRLHCSLVVPPESSFTD 180
Query: 559 PSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
SL P+LY+YTI + L Y EG+ G+Y QP
Sbjct: 181 LSLHPNLYTYTISGNTLHYVPEGHHAGSYDQP 212
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 180 bits (437), Expect = 4e-44
Identities = 97/221 (43%), Positives = 125/221 (56%), Gaps = 10/221 (4%)
Frame = +1
Query: 22 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 201
AF +D L NTI +D I + ++ + L LYPY + + LNQ GI TSYG
Sbjct: 115 AFQPAIDFLHNTIQKDTIASSIIAALNPSLTSSLTLYPYALPPRWPSALNQAGIPATSYG 174
Query: 202 TSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLN-------PNFASLI 360
HPH HK IETHLL EHW + A +PSTVM+MK KF KL+ N NF L+
Sbjct: 175 HQSHPHPIHKTIETHLLHEHWANRATLPSTVMFMKRSKFDKLRVSNAALVKSASNFLHLL 234
Query: 361 NFRHTPKDITRY---PVSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLI 531
N T +D RY P+ + P T + FMH +LM+ +PSQI GLF +P + LY SL+
Sbjct: 235 NPILTARDADRYTHLPLPDTLP-STPLYFMHHSLMYFSPSQIAGLFLAAPFLERLYASLV 293
Query: 532 VPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
+PAE+ G FP LY Y + L Y LEGN + +YTQP
Sbjct: 294 LPAESTIGSHPFFPSLYRYRTTGEHLHYVLEGNPSSSYTQP 334
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 115 bits (276), Expect = 1e-24
Identities = 67/187 (35%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Frame = +1
Query: 103 SNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV 282
+ R + PY +++ L LGI Y H HAA KAIE L HL +
Sbjct: 30 TQMRQATVVNPYALSTDAADALENLGIITNPYSIQLHTHAAAKAIENDLYNTVAYHLPKE 89
Query: 283 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSN------PHPVETEVAFMH 444
P T YMKP K K ++ + IN PKDI RYP P T AFM
Sbjct: 90 PVTFYYMKPGKLGKFRRGPQHKDKFINSLFEPKDIARYPEETVVKHLEESPCSTSNAFMG 149
Query: 445 DALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLE 624
D L F P Q++ LF+ SP + +LY +L++PAEA + +PSL P +YS + +Y
Sbjct: 150 DTLHFFKPEQLMTLFRLSPKLKTLYATLVLPAEAMHELPSLHPHIYSLKYTKNHFIYMPG 209
Query: 625 GNATGNY 645
G+A +Y
Sbjct: 210 GHAGASY 216
>UniRef50_Q65979 Cluster: Brazilian strain defective RNA, complete
sequence; n=2; Cassava common mosaic virus|Rep:
Brazilian strain defective RNA, complete sequence -
Cassava common mosaic virus
Length = 300
Score = 113 bits (271), Expect = 5e-24
Identities = 62/176 (35%), Positives = 94/176 (53%), Gaps = 5/176 (2%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKP 309
PY + LL LG+ Y + H HAA KA+E L ++L R P T M+MKP
Sbjct: 40 PYAQTGEAADLLETLGVITHPYAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKP 99
Query: 310 EKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDALMFITPSQI 477
K Q L++ + +N PKD+ RYP V P++T +AFM D L F+TP +
Sbjct: 100 AKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFV 159
Query: 478 LGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
LF SP + + Y ++++P EA + + SL+P +Y+ K+ +YT G+A +Y
Sbjct: 160 GTLFARSPKLKTFYATMVLPPEALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASY 215
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 110 bits (264), Expect = 3e-23
Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 4/212 (1%)
Frame = +1
Query: 22 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 201
A L D +++ + + E A + + L + P+ V + L ++GI + +
Sbjct: 3 AVQKLFDQISDPNTKAGYSNACFEAAQNASKKALAIAPFSVTNPEALTLERIGITTSPFA 62
Query: 202 TSPHPHAAHKAIETHLLFEHWNHLARVPS-TVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
T+ H HAA K IE L ++L + + T++ +K K L + NPN N+ + P
Sbjct: 63 TTSHTHAADKIIENDCLSIIGHYLPKKEAVTLIQLKRGKLHLLGR-NPNLDRFQNYCYEP 121
Query: 379 KDITRYPVSNPHP---VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAA 549
KD+ RY ++NP+ V+TE A + D L F++P Q+ LF +P + L+ +L++P EA
Sbjct: 122 KDVLRYGLTNPNSCPKVDTEYAVLADTLHFMSPKQLYTLFSKNPKLERLFATLVLPIEAL 181
Query: 550 YGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
+ +PSLFPD+Y D Y G+ G Y
Sbjct: 182 HKLPSLFPDVYKLEYYKDHFSYMPGGHGGGAY 213
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase
- Garlic virus C
Length = 1550
Score = 109 bits (263), Expect = 4e-23
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 3/207 (1%)
Frame = +1
Query: 34 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPH 213
L+D +++ R A + + A + + + PY V L ++GI + + T+ H
Sbjct: 7 LLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQTEALTLERIGITTSPFATTSH 66
Query: 214 PHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITR 393
HAA K IE L ++L + P T++ +K K L++ P + N+ H PKD+ R
Sbjct: 67 THAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLLKR-GPTDDAFQNYCHEPKDVLR 125
Query: 394 YPVSNPHP---VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPS 564
+ ++NPH V T A + D L F++ Q+ LF +P++ LY +L++P EA + +PS
Sbjct: 126 FGLTNPHTCPTVTTSCAVISDTLHFMSSQQLWTLFARNPALQRLYGTLVLPVEALHKLPS 185
Query: 565 LFPDLYSYTIKDDQLVYTLEGNATGNY 645
LFP++Y D Y G+ G Y
Sbjct: 186 LFPEIYKLEYYDKHFAYMPGGHGGGAY 212
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3;
root|Rep: RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 109 bits (261), Expect = 8e-23
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 5/218 (2%)
Frame = +1
Query: 7 SALSMAFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIG 186
S L F L D + +D +++ ++ RH P+ + L LGI
Sbjct: 2 SNLRNVFAQLTDPSLKAVIQDEAYR-VMKKELTATRHS---NPFAQSPAAADTLELLGIN 57
Query: 187 VTSYGTSPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKPEKFQKLQQLNPNFASLIN 363
+PH HAA KAIE+ L ++L + P T ++MKP K + + + +N
Sbjct: 58 SHPLAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLN 117
Query: 364 FRHTPKDITRYP----VSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLI 531
PKD+ RYP + N + T +AFM D L F+ PS I LF SP + +LY +++
Sbjct: 118 AYIEPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMV 177
Query: 532 VPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
+P EA Y + SL+P++Y+ T DD +Y G+A +Y
Sbjct: 178 LPPEALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASY 215
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 103 bits (248), Expect = 3e-21
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 4/212 (1%)
Frame = +1
Query: 22 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 201
A L D +++ + + E A + + + P+ V + L + GI + +
Sbjct: 3 AVQKLFDQISDPNTKAGYSNACFEAAQRRPKKAMAIAPFSVTTPEALTLERFGITTSPFA 62
Query: 202 TSPHPHAAHKAIETHLLFEHWNHLA-RVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTP 378
T+ H HAA K IE L ++L R T++ +K K L + P+ + N+ H P
Sbjct: 63 TTSHTHAADKIIENDCLTIIGHYLPKREAVTLIQLKRSKIHLLGR-QPSQDNFQNYCHEP 121
Query: 379 KDITRYPVSNPHP---VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAA 549
KD+ RY +++P+ V TE A + D L F++P Q+ LF +P + L+ +L++P EA
Sbjct: 122 KDVLRYGITHPNSCPVVNTEYAVLADTLHFMSPRQLYHLFSRNPKLERLFATLVLPIEAQ 181
Query: 550 YGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
+ +PSLFPD+Y D Y G+ G Y
Sbjct: 182 HRLPSLFPDVYRLEYYKDHFAYMPGGHGGGAY 213
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Plantago asiatica mosaic potexvirus (P1AMV)
Length = 1385
Score = 97.5 bits (232), Expect = 2e-19
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 204
F+ L D + +D L + ++ RH P+ + + L LGI Y
Sbjct: 8 FSQLTDPSLKAVIQDEAYRVL-KRELAQTRHT---NPFAQSPEAADALEALGINSHPYAI 63
Query: 205 SPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPK 381
+ H HAA KAIE+ L ++L + P + ++MKP K + + + +N PK
Sbjct: 64 TSHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPK 123
Query: 382 DITRYP----VSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAA 549
D+ RYP ++ + T++AFM D L F++PS + LF SP + +LY +L++P E +
Sbjct: 124 DVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPS 183
Query: 550 YGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
SL+P +Y+ T +D +Y G+A +Y
Sbjct: 184 TS-RSLYPQIYTLTYSEDGFMYIPGGHAGASY 214
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase
RdRp; n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 96.3 bits (229), Expect = 6e-19
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 5/213 (2%)
Frame = +1
Query: 22 AFTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYG 201
A + DT T ++ + T + N H + Y + L LGIG +
Sbjct: 7 AIDRITDTTVRTTLQEEACRQ-IRTELKNVEH---VNRYAIPPDAADALEHLGIGTNPFS 62
Query: 202 TSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHT-P 378
H H A KAIE LL+ L + T++++K K +++ P F + +H P
Sbjct: 63 VKLHTHGACKAIENQLLYVVGTLLPKERVTMLFLKKAKLNFMKRC-PKFQDIFLNQHIEP 121
Query: 379 KDITRYPVSNPHPVETEV----AFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEA 546
+D++RY N T + A++ D L F+ ++ LF +SP++ +LY ++++P EA
Sbjct: 122 RDVSRYCDFNVQSTSTSIPTHTAYISDTLHFMDRKDLVRLFINSPNLDTLYATIVLPVEA 181
Query: 547 AYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
AY PS +PDLY D Y G+ G Y
Sbjct: 182 AYRQPSRYPDLYQINYDFDGFQYIPGGHGGGAY 214
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato
virus X|Rep: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X
(PVX)
Length = 1456
Score = 95.9 bits (228), Expect = 7e-19
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 5/181 (2%)
Frame = +1
Query: 112 RHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPST 291
+HKL PY + L GI Y H HAA K IE LL + L + P T
Sbjct: 34 KHKLA-NPYAQTVEAANDLEGFGIATNPYSIELHTHAAAKTIENKLLEVLGSILPQEPVT 92
Query: 292 VMYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYP----VSNPHPVETEVAFMHDALM 456
M++KP K +++ NP + N P+D+ RYP + + T+ A++ D L
Sbjct: 93 FMFLKPRKLNYMRR-NPRIKDIFHNVAIEPRDVARYPKETIIDKLTEITTDTAYIGDTLH 151
Query: 457 FITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNAT 636
F+ PS I+ F++ P + +LY +L++P EAA+ + S P++YS D Y + GN
Sbjct: 152 FLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHPNIYSLKYFGDGFQY-IPGNHG 210
Query: 637 G 639
G
Sbjct: 211 G 211
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 95.1 bits (226), Expect = 1e-18
Identities = 70/199 (35%), Positives = 95/199 (47%), Gaps = 3/199 (1%)
Frame = +1
Query: 58 IHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAI 237
I RDA+T E AI + PY +SK L GIG Y H HAA KAI
Sbjct: 260 IERDAVTEIKKEIAIVR-----KYNPYHHSSKQQSALESYGIGSDPYAVRSHTHAAEKAI 314
Query: 238 ETHLL-FEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP-VSNP 411
E LL N R T+++ K K + + N +N KD+ RY S
Sbjct: 315 ENKLLDIVGMNLRRRSVITMLWQKRNKAHLMGRSNCKDV-YVNTIMEAKDLVRYDQFSFG 373
Query: 412 HP-VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSY 588
P V T AF+ DAL +TP + LF+ SP++ L+ ++++P E S P+LYS
Sbjct: 374 LPSVATSTAFIGDALHHMTPESVFDLFERSPNLMVLHATIVIPPETLLKCRSSNPELYSL 433
Query: 589 TIKDDQLVYTLEGNATGNY 645
DD+ VY EG+A G+Y
Sbjct: 434 RYYDDKFVYIPEGHAGGSY 452
>UniRef50_Q66339 Cluster: Non-structural/coat protein fusion
product; n=5; Clover yellow mosaic virus|Rep:
Non-structural/coat protein fusion product - Clover
yellow mosaic virus (CYMV)
Length = 312
Score = 94.7 bits (225), Expect = 2e-18
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKP 309
PY + LL LGI + PH H A KAIE L + + + P T M+MK
Sbjct: 40 PYAHSESTADLLEDLGIATNPFAAEPHTHGAAKAIENDLYYIASTRMTKEEPVTFMFMKR 99
Query: 310 EKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHP----VETEVAFMHDALMFITPSQI 477
K Q ++ + IN PKD+ RY H +ET+ F+ D L F+ PS +
Sbjct: 100 AKLQYFRRGPQQNDTFINQIVEPKDVARYDEDTLHSTIPTIETKTVFIGDTLHFLPPSFL 159
Query: 478 LGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYS 585
LF +P + ++ ++++P EA YG+ SL+P++YS
Sbjct: 160 TKLFARNPKIQTVLATMVLPTEALYGLTSLYPNVYS 195
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus
X|Rep: Replicase protein - Nerine virus X
Length = 1504
Score = 94.7 bits (225), Expect = 2e-18
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Frame = +1
Query: 112 RHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPST 291
R + P+ ++ L LGI Y H H A KAIE +L ++L + P T
Sbjct: 33 REATLINPFAIDDAAADSLESLGIITNPYAVKLHTHGAVKAIENQMLSIVGHNLPKRPVT 92
Query: 292 VMYMKPEKFQKLQQLNPNFASLI-NFRHTPKDITRYP----VSNPHPVETEVAFMHDALM 456
M++K K + L++ +P + + N+ P+D+ RYP + V T+VA++ D L
Sbjct: 93 YMFLKKSKLRYLRR-DPRISDVFQNYEIEPRDVARYPPETVLKRFTVVNTDVAYISDTLH 151
Query: 457 FITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNAT 636
F+ P+ + LF+ S ++ +LY ++++P EA + +PSL P+LY D Y +
Sbjct: 152 FLRPTFLTALFERSHNLQTLYATMVLPPEALHKLPSLEPNLYQINYSFDGFQYIPGRHGG 211
Query: 637 GNY 645
G Y
Sbjct: 212 GAY 214
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 94.3 bits (224), Expect = 2e-18
Identities = 61/210 (29%), Positives = 91/210 (43%), Gaps = 6/210 (2%)
Frame = +1
Query: 43 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHA 222
++ + H+DA P + + PY V LL Q+GI H H
Sbjct: 11 SVTQSFHKDATQGPTTNEYLVARAETQRYAPYAVRKGPAALLAQVGINTIHDSPLSHSHP 70
Query: 223 AHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQ-QLNPNFASLI--NFRHTPKDITR 393
A A+ + + V K F+KLQ Q++ +L N+ T +D R
Sbjct: 71 ACYALNAFHFLKVIPRYLHGKAEVWGTKDNWFRKLQAQIDSQTTTLTHRNYAITARDHVR 130
Query: 394 YP---VSNPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPS 564
YP V +P FMHDAL ++TP + LF SP M SL + ++P E+ +P+
Sbjct: 131 YPGTVVDHPGSCTAGTLFMHDALQYMTPLDVYTLFATSPEMHSLVATAVIPPESVDRLPA 190
Query: 565 LFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
+P+LY +D L Y +GN Y QP
Sbjct: 191 FWPELYQLAYYEDHLCYAPDGNFADAYNQP 220
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus
X|Rep: ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 93.9 bits (223), Expect = 3e-18
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPE 312
PY + L GI + Y T H HAA KAIE +L HL + T++++K
Sbjct: 40 PYALTDAEADCLENFGITINPYATQTHTHAACKAIENRMLEIVGKHLPKEKVTMLFLKKS 99
Query: 313 KFQKLQQLNPNFASLINFRHTPKDITRYP---VSNP-HPVETEVAFMHDALMFITPSQIL 480
K + L++ IN PKD+ RY + N V+T +A+M D L F+ + +
Sbjct: 100 KLRYLRRAAALNDVFINKDMEPKDLFRYDRDTIRNSLQNVDTSLAYMSDTLHFMNFNSVA 159
Query: 481 GLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
LF DSP +T+L ++++P EA + SL+P LYS Y + G Y P
Sbjct: 160 QLFVDSPKLTTLLATVVLPVEALHRRSSLYPALYSINYHPQGFEYIPGNHGGGAYFHP 217
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep:
Replicase - Hosta virus X
Length = 1507
Score = 93.1 bits (221), Expect = 5e-18
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 6/181 (3%)
Frame = +1
Query: 121 LQLY-PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVM 297
+Q Y PY LL LGI + + H HAA K+IE L ++L + P T +
Sbjct: 35 IQTYNPYAQTKDAADLLEDLGINTNPHAVTAHTHAAAKSIENDLYGITSHYLPKTPITFL 94
Query: 298 YMKPEKFQKLQQLNPNFASLINFR-HTPKDITRYP----VSNPHPVETEVAFMHDALMFI 462
+MK K Q ++ P L + H PKD+ RY ++ V T F+ D L F+
Sbjct: 95 FMKRGKLQFFKR-GPQHNDLFFYTTHEPKDVIRYQSEDQTADMFRVPTSTGFIGDTLHFL 153
Query: 463 TPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGN 642
+ + LF +P++ +LY ++++P EA Y + S++P++Y ++D +Y G+
Sbjct: 154 SLKYLHRLFLKNPNLNTLYATMVLPPEAMYRMASIYPEIYQIQYQEDGFLYIPGGHGGAA 213
Query: 643 Y 645
Y
Sbjct: 214 Y 214
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Narcissus mosaic virus (NMV)
Length = 1643
Score = 91.5 bits (217), Expect = 2e-17
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 4/178 (2%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPE 312
PY +++ L GI V Y H HAA K IE +L HL + T++++K
Sbjct: 40 PYALSNDEADCLESFGITVNPYANQTHTHAACKVIENRMLEIVGMHLPKHSCTMLFLKRS 99
Query: 313 KFQKLQQLNPNFASLINFRHTPKDITRYPV----SNPHPVETEVAFMHDALMFITPSQIL 480
K + +++ +N PKD+ RY S ++T++A+M D L F++ +I+
Sbjct: 100 KLRYMRRAAILKDVFLNKDVEPKDLFRYDRDTIRSRLQDIDTKIAYMSDTLHFMSRREIV 159
Query: 481 GLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNYTQP 654
LF+DSP + +L ++++P EA + SL+P LYS Y + G+Y P
Sbjct: 160 QLFEDSPKLETLLATVVLPVEALHKRTSLYPSLYSINYSAKGFEYIPGNHGGGSYFHP 217
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 88.2 bits (209), Expect = 2e-16
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 3/174 (1%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPE 312
PY + + L LG+ V + H HAA K E +L HL + PST +++K
Sbjct: 40 PYALTEEEADCLENLGVTVNPFAIQTHTHAAAKTEENRMLEIVGTHLPKEPSTFIFLKRS 99
Query: 313 KFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPV---ETEVAFMHDALMFITPSQILG 483
K + L++ N N PKD+ RY + + T A++ DAL F++ +Q+
Sbjct: 100 KLRYLRRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGK 159
Query: 484 LFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
+F+DSP + +L++P E+ + PSL P +Y+ D Y +A G Y
Sbjct: 160 IFQDSPKLKIQLATLVLPVESLHRHPSLHPAIYTLNYHKDGFEYIPGNHAGGAY 213
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus
X|Rep: 158kDa replicase - Botrytis virus X
Length = 1413
Score = 87.8 bits (208), Expect = 2e-16
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 6/178 (3%)
Frame = +1
Query: 130 YPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLA--RVPSTVMYM 303
+PY+V+ LL + G+ + T+ H HAA K +E L E L P T +
Sbjct: 39 FPYKVDESTAILLEKEGVLTNPFSTTLHTHAAEKMLENRTLNEVGKKLKVHTGPFTFIQF 98
Query: 304 KPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH---PVETEVAFMHDALMFITPSQ 474
K K + + + +IN+ KD++R+ + PV VA +HD L F++P Q
Sbjct: 99 KTGKLGHVGRGHNQGDQIINYAREAKDLSRFETLDTAVVPPVHNRVALLHDTLHFLSPRQ 158
Query: 475 ILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYT-IKDDQLVYTLEGNATGNY 645
+ LF +P++ LY +L++P EA + +PSL P Y+ + Y G+A Y
Sbjct: 159 LAQLFHHNPNLHLLYATLVLPVEALHNLPSLNPHAYTLEYFSNGDFAYMPGGHAGSGY 216
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White
clover mosaic virus (strain O) (WCMV)
Length = 1294
Score = 85.8 bits (203), Expect = 8e-16
Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 8/201 (3%)
Frame = +1
Query: 70 AITAPLVETAISNFR----HKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAI 237
++ A L E A S+ R L PY + L + GI + H H A K+I
Sbjct: 15 SVKAVLNEEAYSHIRPVLRESLTNNPYAIAPDAADTLEKYGIATNPFAVKVHSHGAVKSI 74
Query: 238 ETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VS 405
E LL +L + P T +++K K + L++ N IN P+D+ RY V
Sbjct: 75 ENTLLERVGFNLPKEPCTFLFLKRSKLRYLRRGPSNNDIFINLAIEPRDLQRYEEDTLVE 134
Query: 406 NPHPVETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYS 585
+ + T A++ D F T + LF +P++ LY +L++P EA + PS+ PDLY+
Sbjct: 135 SWTRITTRYAYISDTFHFFTRKMLADLFFHNPALDVLYATLVLPPEALHKHPSIEPDLYT 194
Query: 586 YTIKDDQLVYTLEGNATGNYT 648
+ Y + G+Y+
Sbjct: 195 INYNFNGFQYIPGNHGGGSYS 215
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Papaya mosaic potexvirus (PMV)
Length = 1547
Score = 85.0 bits (201), Expect = 1e-15
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKP 309
PY + L +LGI + H HAA K IE + +L + P+T M+MK
Sbjct: 40 PYAHPVAVADSLEKLGIETNPFAVKAHTHAAAKTIELDMYKIVSFYLPKENPTTFMFMKR 99
Query: 310 EKFQKLQQLNPNFASLINFRHTPKDITRYPVS-----NPHP-VETEVAFMHDALMFITPS 471
K Q ++ +N PKD+ RY V N P + T AFM D L F+ +
Sbjct: 100 SKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDTLFDKNVTPQITTNTAFMGDTLHFLPLT 159
Query: 472 QILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
I +FK SP + +LY ++++P EA + + SL P +Y + +Y G+A Y
Sbjct: 160 AIERIFKSSPKLQTLYATMVLPPEALHRLHSLHPGIYELEFHQEHFIYKPGGHAGAAY 217
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 83.0 bits (196), Expect = 6e-15
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Frame = +1
Query: 133 PYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPS-TVMYMKP 309
PY +N L LG+ + + H HAA K +E +L +HL + T +++K
Sbjct: 40 PYALNDYEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKR 99
Query: 310 EKFQKLQQLNPNFASLINFRHTPKDITRYP---VSNPHPVETEVAFMHDALMFITPSQIL 480
K + +++ + +N PKD RY S V T +A++ D+L F+ P+ +
Sbjct: 100 SKLRYMRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVT 159
Query: 481 GLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
LF ++ +L ++++P EA + SLFP +YS ++ Y + G Y
Sbjct: 160 HLFDRCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAY 214
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 82.6 bits (195), Expect = 7e-15
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 8/212 (3%)
Frame = +1
Query: 34 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPL----LNQLGIGVTSYG 201
LV + ++I ++ A L E A S + L+ L+P L + I +
Sbjct: 3 LVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLPTAANTLERYAIPHNPFS 62
Query: 202 TSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPK 381
T H HAA KA+E L L + + ++MKP K Q ++ + + IN K
Sbjct: 63 TKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYFRRRG-DVDTFINADIVAK 121
Query: 382 DITRYPVSNPHP----VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAA 549
D+ RYP+ +P + T++AF+ D+L + P + +F SP + +L ++++P EA
Sbjct: 122 DLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFTSSPQLETLLATIVLPPEAT 181
Query: 550 YGVPSLFPDLYSYTIKDDQLVYTLEGNATGNY 645
+ SL+P++Y+ + +Y G + G Y
Sbjct: 182 LRLKSLYPEIYTLHYMPQKFLYKPGGLSGGEY 213
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Foxtail mosaic virus
Length = 1335
Score = 82.2 bits (194), Expect = 1e-14
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Frame = +1
Query: 109 FRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHL---AR 279
F+ + PY + +L + I Y HPHAA KA E L N+L +
Sbjct: 31 FKETTRCNPYSIPQAGRKVLEKYAIPYNPYSLKLHPHAASKAFEVSLYEAASNYLPSTSS 90
Query: 280 VPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETEV----AFMHD 447
P T M+ KP K + ++ + +N P+D+ RYP + E+ AF+ D
Sbjct: 91 TPVTFMFTKPGKLRFFRRRG-HVDKFVNADIVPRDLARYPRDTVYSYLPEITTTHAFIGD 149
Query: 448 ALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEG 627
L ++ +F SP + L ++++P EA Y + SL P +Y+ +DD+ +Y G
Sbjct: 150 TLHHFGEDFLVEVFSRSPKLEVLLATMVLPPEAFYRMESLHPSVYTLLYRDDRFLYLPGG 209
Query: 628 NATGNY 645
+ G Y
Sbjct: 210 LSGGEY 215
>UniRef50_Q3MLL0 Cluster: Putative movement protein; n=1; Nemesia
ring necrosis virus|Rep: Putative movement protein -
Nemesia ring necrosis virus
Length = 632
Score = 76.2 bits (179), Expect = 6e-13
Identities = 63/209 (30%), Positives = 91/209 (43%)
Frame = +3
Query: 18 HGFHQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLL 197
HG SR H PPR + S S + + A LP+ + Q R+ +
Sbjct: 3 HGLPVSSRRPVHHLPPRFISESGSQSLGHAASAVARPLPLDHHQGLSAFPQLLRNPGLGI 62
Query: 198 WHFTSSSCRS*GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHP 377
H S G+R+ P + LE S S +VYET ++ +T +PKL H L +H
Sbjct: 63 RHHPPPPRCSQGYRDLPALLPLELSSLHSQLRHVYETIKVSQTGGHQPKLRRTHQLSSHS 122
Query: 378 KGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWS 557
+ H S+P S + +HARR+ V Y N R F+ LP L R +L
Sbjct: 123 RRHRSLPHHFLLSPPARNRLHARRADVLYAASNRRSFRTLPTPQPVALQPSGAPRKQLHR 182
Query: 558 AFTLP*SLQLHNQR*SAGVHSRRKCYRQL 644
+ P L LH++ +HSRR R+L
Sbjct: 183 SLPSPNHLHLHSEFQQPSLHSRRSSRRKL 211
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Strawberry mild yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 74.5 bits (175), Expect = 2e-12
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 4/183 (2%)
Frame = +1
Query: 103 SNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV 282
SN R + PY V+++ L +L I + H HAA K+IE +L + L +
Sbjct: 31 SNLREAEIINPYSVDARGAEALEELAIITNPHSIRLHTHAAAKSIENQMLNIVGHALPKE 90
Query: 283 PSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYP----VSNPHPVETEVAFMHDA 450
P T +++K K + L + N P+D+ RY V + T VA++ D
Sbjct: 91 PVTFLFLKRGKLRYLSRGRIK-DIFQNQEIEPRDVARYEHKTIVQKSLLLNTRVAYISDT 149
Query: 451 LMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTLEGN 630
L F+ P I+ LF + + LY ++++P EA++ PS P +Y+ Y L GN
Sbjct: 150 LHFLRPRYIIDLFSQNVFLDVLYATVVLPVEASFKHPSQNPAIYTINYNYGGFQY-LPGN 208
Query: 631 ATG 639
G
Sbjct: 209 HGG 211
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 63.7 bits (148), Expect = 4e-09
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Frame = +1
Query: 118 KLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVM 297
K++ + + + K + G+ ++ + H H K +E HLLF N +A S
Sbjct: 39 KVENFSFYLPEKTREWFTKSGVYLSPFAYVNHSHPGCKTLENHLLF---NVVASYISKYS 95
Query: 298 YM-----KPEKFQKLQQLNPNFAS---LINFRHTPKDITRY-----PVSNPHPVETEVAF 438
Y+ K K K+++L N ++N T KD RY P +P P +T + F
Sbjct: 96 YVACLSIKSNKMSKMERLGSNSVKTYDILNRLVTAKDKARYGPLARPERSPCPKKTNI-F 154
Query: 439 MHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPS-LFPDLYSYTIKDDQLVY 615
+HD + + + Q L F +L+ +L+ P E G S + P LY + I LVY
Sbjct: 155 IHDEIHYWSRDQ-LETFLQVHRPKNLWATLVFPPEILAGYKSSVLPFLYQFEIHGKDLVY 213
Query: 616 TLEGNATGNYTQP 654
+G + +YTQP
Sbjct: 214 MPDGVRSESYTQP 226
>UniRef50_O91259 Cluster: Overlapping protein; n=1; Physalis mottle
virus|Rep: Overlapping protein - Physalis mottle virus
(PhMV) (Belladonna mottle virus-Iowa)
Length = 666
Score = 61.3 bits (142), Expect = 2e-08
Identities = 49/156 (31%), Positives = 66/156 (42%)
Frame = +3
Query: 177 RHRSHLLWHFTSSSCRS*GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFP 356
RH S + S S HRN +L C S + +V+ET +IP+ S + +L
Sbjct: 56 RHSSFRTGYRPSPSPHPQNHRNPSSFHSLAPPCSSPIHCDVHETFQIPEASGHQSQLLSS 115
Query: 357 H*LQAHPKGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSP 536
L ++ H +PR + + +HARRSHV P N RP L LL H
Sbjct: 116 PQLPSNLGRHLPIPRDVNALANHDKLLHARRSHVLPPLSNSRPLHELRTTANPLLQPHCS 175
Query: 537 CRSRLWSAFTLP*SLQLHNQR*SAGVHSRRKCYRQL 644
R F+L L L N R +H R RQL
Sbjct: 176 PRIPFHQPFSLSLRLYLSNSRPHPALHPRISPCRQL 211
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7;
Grapevine virus A|Rep: RNA-dependent RNA polymerase -
Grapevine virus A
Length = 1707
Score = 60.5 bits (140), Expect = 3e-08
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 18/194 (9%)
Frame = +1
Query: 127 LYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMK 306
L+ Y + L +L+ G+ + + H H K IE H+L+ + + V+ K
Sbjct: 45 LFDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRVAPNYFSNNTLVVSCK 104
Query: 307 PEKFQKLQQLNP-----NFASLINFRHTPKDITRYP-------VSNPHPV-----ETEVA 435
K ++L+ N NF H KD RY V N + ++E
Sbjct: 105 EGKIKRLRLKNAGNRNLNFTQYNRLVHA-KDHHRYENAFRELDVGNLTNLINKESQSECI 163
Query: 436 FMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVP-SLFPDLYSYTIKDDQLV 612
F+HD + + + ++ + + S+I PAE G SLFP+ Y++ +K+ +L+
Sbjct: 164 FIHDEVQYWSLDEMQRFLGSLSKVDRIVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRLI 223
Query: 613 YTLEGNATGNYTQP 654
+ +G A G YTQP
Sbjct: 224 WYPDGKAEGAYTQP 237
>UniRef50_A5JPL2 Cluster: Putative movement protein; n=1; Okra
mosaic virus|Rep: Putative movement protein - Okra
mosaic virus
Length = 671
Score = 59.7 bits (138), Expect = 6e-08
Identities = 41/138 (29%), Positives = 64/138 (46%)
Frame = +3
Query: 237 RNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 416
RN P + L++ + + +++ET E+ + S ++P+L P L HP+G HS S
Sbjct: 76 RNPPSLQPLDTPRRPARLSSLHETPEVSQASKVEPQLPTPPQLPHHPEGLHSFSFFLHDS 135
Query: 417 CRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWSAFTLP*SLQLHNQ 596
++ HARR HV P+ P +P L S P R L + +LP LQL N
Sbjct: 136 PKHPRRFHARRPHVLSSLPDSAPLSPVPPTGSPLRLSGRPTRKLLHRSLSLPRHLQLSNS 195
Query: 597 R*SAGVHSRRKCYRQLHS 650
+ R R++ S
Sbjct: 196 LPDPSLRPGRPLRRRVQS 213
>UniRef50_Q32WC8 Cluster: Overlapping protein p62; n=1; Dulcamara
mottle virus|Rep: Overlapping protein p62 - Dulcamara
mottle virus
Length = 576
Score = 55.6 bits (128), Expect = 1e-06
Identities = 52/212 (24%), Positives = 82/212 (38%)
Frame = +3
Query: 18 HGFHQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLL 197
+GF R ++ H R S S P + L ++ + + + +L
Sbjct: 3 NGFSVSPRSTQLDHTSRCCVSSNSNFGRSTSPGFSGNLSMASSKRGSSFLEQPGDTGFIL 62
Query: 198 WHFTSSSCRS*GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHP 377
+ S + P TLE S + ++ET E+ K KP+ L AH
Sbjct: 63 RDYAPPSPHPQNSGDFSPTPTLELPLCHSLHSPLHETLEVSKAPTEKPQFPGVKKLPAHV 122
Query: 378 KGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWS 557
H V S N +HARRS+V N RP + H T+L P R +L
Sbjct: 123 IRHRPVSHHLHHSSHNRVRLHARRSNVLPSQSNMRPLSEVSKHSETVLQLGDPTRVQLHG 182
Query: 558 AFTLP*SLQLHNQR*SAGVHSRRKCYRQLHST 653
F+ P L L + R ++ + + + R + ST
Sbjct: 183 PFSPPRDLHLSDLRTNSSLRAGKSLIRFVQST 214
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 53.2 bits (122), Expect = 5e-06
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Frame = +1
Query: 46 LANTIHRDAITAPLVE--TAISNFRHK-LQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHP 216
L N+++ D T L E TA+ N+ + L + PY ++ K LL++ GI ++S H
Sbjct: 12 LLNSLNSDEQTKVLKEAVTALKNYESQNLSVSPYCMSDKARLLLDESGIPLSSTPFVSHS 71
Query: 217 HAAHKAIETHLLFEHWNHLARVPS-TVMYMKPEKFQKLQQLNP-NFASLINFRHTPKDIT 390
H K +E HLLF + S ++ MK EKF N F L+N T KD+
Sbjct: 72 HPVCKTLENHLLFNVLPMYIKDNSFVIISMKQEKFNLFSARNKLPFLDLVNRFVTVKDVI 131
Query: 391 RY 396
RY
Sbjct: 132 RY 133
>UniRef50_Q3BD97 Cluster: Putative movement protein; n=1; Plantago
mottle virus|Rep: Putative movement protein - Plantago
mottle virus
Length = 627
Score = 50.8 bits (116), Expect = 3e-05
Identities = 39/128 (30%), Positives = 57/128 (44%)
Frame = +3
Query: 162 IAQSTRHRSHLLWHFTSSSCRS*GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKP 341
I+ RH LW ++S C S R+S + LESSC S + +V+ET ++ +T +
Sbjct: 51 ISHCHRHSCLRLWDHSTSPCCSQSDRDSSSLSPLESSCVDSIFSHVHETIKVSQTCETQS 110
Query: 342 KLCFPH*LQAHPKGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLL 521
+L H +H S+ R S VHARR+ V F + +P L
Sbjct: 111 ELRRAHQFSSHRCRQRSLSRNLHISALPADCVHARRADVLPSFSDPGSVHSMPEPPTPPL 170
Query: 522 FSHSPCRS 545
PCRS
Sbjct: 171 ---QPCRS 175
>UniRef50_P20129 Cluster: 70 kDa protein; n=1; Eggplant mosaic
virus|Rep: 70 kDa protein - Eggplant mosaic virus
Length = 649
Score = 50.4 bits (115), Expect = 4e-05
Identities = 39/138 (28%), Positives = 62/138 (44%)
Frame = +3
Query: 237 RNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 416
R+ PV +L S +F +V+ET ++ KT KPK+ L H + HHS+P
Sbjct: 76 RDFSPVQSLACSRSPAFNCDVHETVQVSKTCGSKPKIPRVDQLSTHCRRHHSLPLHLTHF 135
Query: 417 CRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWSAFTLP*SLQLHNQ 596
+ + +HAR S V + + R + +L SHS R + +LP L L +
Sbjct: 136 SKQFNLLHARCSDVLFSSSDRRSLHSVSRTRDPVLQSHSASRVSFHRSLSLPRDLHLQDL 195
Query: 597 R*SAGVHSRRKCYRQLHS 650
R + +H R + S
Sbjct: 196 RSDSPLHPGESPLRLVQS 213
>UniRef50_Q3BDA0 Cluster: Putative movement protein; n=1;
Scrophularia mottle virus|Rep: Putative movement protein
- Scrophularia mottle virus
Length = 617
Score = 50.0 bits (114), Expect = 5e-05
Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 1/213 (0%)
Frame = +3
Query: 18 HGFHQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLL 197
+GF +R S P RR S P S +P+ + S + S +
Sbjct: 3 YGFPACTRLSLIDRPQRRVFEPCSEPLSTTPPRLPSAIPLDHPEGTSAFPDSLWNSSFRI 62
Query: 198 WHFTSSSCRS*GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHP 377
+F+ S C + +RN +LE F+ +V+ET ++ + + K L A+
Sbjct: 63 RNFSPSPCCAQSYRNILAFLSLELHGLDPFFCHVHETLQVRTLAIRQSKFLRASQLSAYS 122
Query: 378 KGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNF-RPFQGLPFHDLTLLFSHSPCRSRLW 554
+ S+P S S +HAR SHV FPN F+ TL S SP R +L
Sbjct: 123 RRLSSLPHHLHLSSIPRSRLHARCSHVLRAFPNSPAVFELSQPSTTTLQPSRSP-RKQLH 181
Query: 555 SAFTLP*SLQLHNQR*SAGVHSRRKCYRQLHST 653
P L LH R + + SRR +L ST
Sbjct: 182 RPLPPPIRLHLHPSREHSPLRSRRTPRWKLRST 214
>UniRef50_P35929 Cluster: Uncharacterized 48 kDa protein; n=2;
Erysimum latent virus|Rep: Uncharacterized 48 kDa
protein - Erysimum latent virus (ELV)
Length = 440
Score = 48.0 bits (109), Expect = 2e-04
Identities = 56/212 (26%), Positives = 83/212 (39%), Gaps = 1/212 (0%)
Frame = +3
Query: 18 HGFHQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLL 197
+GF R HH PR + GS S + P T+P+ P AQS H S L
Sbjct: 3 NGFSTSPRRPILHHSPRFNLGSSSRLFCESTPIFIGTIPLHCPKGTCPPAQSHGH-SSLR 61
Query: 198 WHFTSSSCRS*GHRNS-PPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAH 374
+ SS R + + P + L Q ++ET ++ +T + L L
Sbjct: 62 TNLNSSPPRCPQNPGTEPSLQPLGKVLQCGLSRGLHETLKVLQTPREELPLQISSQLPTS 121
Query: 375 PKGHHSVPR*QPSSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLW 554
P SVP Q + +H R V Y PN R + LP ++ R
Sbjct: 122 PSRLQSVPTSQHKPAYREAILHPRLPDVFYAAPNLRFVRKLPKPSQSVRQPRRSSRKLND 181
Query: 555 SAFTLP*SLQLHNQR*SAGVHSRRKCYRQLHS 650
+ P S+ + N + + +H+RR RQL S
Sbjct: 182 RLVSKPRSVSVLNPQVDSPLHTRRALSRQLQS 213
>UniRef50_Q9QCX4 Cluster: Overlapping protein; n=1; Chayote mosaic
virus|Rep: Overlapping protein - Chayote mosaic virus
Length = 680
Score = 46.8 bits (106), Expect = 5e-04
Identities = 43/138 (31%), Positives = 57/138 (41%)
Frame = +3
Query: 231 GHRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QP 410
G R+ P V LE S +E +I + S +P L L A + H VP Q
Sbjct: 74 GPRDQPSVQPLEPPLPGSLDRAFHEALKIQEASGSQPPLLPTPQLPAVLRRHSPVPHHQL 133
Query: 411 SSCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWSAFTLP*SLQLH 590
VHARR+ V P N P +P LL S R RL LP S+ +
Sbjct: 134 YPPHLNQRVHARRADVLPPQSNTGPLSPMPPTRDALLQSRDSPRVRLHGLLPLPSSVPIP 193
Query: 591 NQR*SAGVHSRRKCYRQL 644
+ R + +H R+ RQL
Sbjct: 194 SDRLVSPLHPRKPSRRQL 211
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 46.0 bits (104), Expect = 8e-04
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +1
Query: 196 YGTSPH---PHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFA-SLIN 363
Y +SP PH KA+E H + R TV+ MKP K L+ P +L+N
Sbjct: 57 YSSSPVGRVPHVMLKALENHRNVNILPNYLRGRVTVLSMKPAKLAALRARCPGVQFNLVN 116
Query: 364 FRHTPKDITRYPVSNPHP---VETEVAFMHDALMFITPSQILGLFKDSPSMTSLYCSLIV 534
TP D TRY +P P ++ + DAL + +I F+ L + I
Sbjct: 117 EIITPADHTRYTDPSPPPDFQGPGDMILVDDALQHWSRERIDAAFRHFGG-NRLIGTNIH 175
Query: 535 PAEAAYGVPSLFPDLYS 585
P E G S +PDLY+
Sbjct: 176 PDEVRSGHASRYPDLYT 192
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 44.4 bits (100), Expect = 0.002
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 436 FMHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVP-SLFPDLYSYTIKDDQLV 612
F+HD + + + S ++ F D + L + ++P E G P SL P Y Y I +QL+
Sbjct: 176 FLHDEIHYWSISDLIN-FLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLL 234
Query: 613 YTLEGNATGNYTQP 654
+ +GN Y+QP
Sbjct: 235 FAPDGNWNEMYSQP 248
Score = 36.7 bits (81), Expect = 0.49
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = +1
Query: 73 ITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLL 252
++A ++ + + L+ + + + L GI ++ Y PH H K +E H+L
Sbjct: 24 VSATALKALVDLEESQHNLFSFALPDRSKERLISSGIYLSPYSFRPHSHPVCKTLENHIL 83
Query: 253 FEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFA--SLINFRHTPKDITRY 396
+ + +K K Q L++ N + + +LIN T +D++RY
Sbjct: 84 YNVLPSYVNNSFYFVGIKDFKLQFLKRRNKDLSLVALINRFVTSRDVSRY 133
>UniRef50_P20130 Cluster: 66 kDa protein; n=1; Ononis yellow mosaic
virus|Rep: 66 kDa protein - Ononis yellow mosaic virus
Length = 597
Score = 42.7 bits (96), Expect = 0.007
Identities = 40/139 (28%), Positives = 55/139 (39%)
Frame = +3
Query: 237 RNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPSS 416
RN P + LE +V+ET ++ K + KL L +H S+P S
Sbjct: 76 RNLPSLQPLELHGDRPGLCDVHETLQVQKIGLRQSKLLRTSKLPSHRGRFRSIPLHLHLS 135
Query: 417 CRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWSAFTLP*SLQLHNQ 596
+ HAR V P + RP +P L S R L + P L LHN
Sbjct: 136 SEVRNRFHARCPDVLQPLSDTRPLHSVPLSSEAPLQSSCSPRKLLHRPLSPPKPLHLHNF 195
Query: 597 R*SAGVHSRRKCYRQLHST 653
R + + SRR R+L T
Sbjct: 196 RQHSSLCSRRSPCRKLRPT 214
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 42.3 bits (95), Expect = 0.010
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Frame = +1
Query: 7 SALSMAFTNLVDTLANTIHRDAITA-PLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGI 183
S L TN T + I + AI +E+++ NF L + Y KLI GI
Sbjct: 7 SPLEEVLTNFSSTEQSLISKTAINHYSNLESSLFNF-FNLNVDAYS-KEKLI----NSGI 60
Query: 184 GVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNP--NFASL 357
++ + PH H K +E H+L+ L T + +K K Q L+Q + N L
Sbjct: 61 YLSPFSGVPHSHPVCKTLENHILYRVLPSLIDSTFTFVGIKEAKLQFLRQRHSHLNLVQL 120
Query: 358 INFRHTPKDITRYP 399
IN T D RYP
Sbjct: 121 INRYVTSADRLRYP 134
>UniRef50_P79950 Cluster: Tyrosine kinase receptor; n=3;
Xenopus|Rep: Tyrosine kinase receptor - Xenopus laevis
(African clawed frog)
Length = 1369
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 289 TVMYMKPEKFQKLQQLNPNFASLINF----RHTPKDITRYPVSNPHPVETEVAFMHDALM 456
T MY++P++ + L + L+ P+ ++ + +S+ HPV EV + D+L
Sbjct: 431 TSMYVRPQEDLTIGFLGTSVGRLLQVVLQRNSKPRTLSNFSISDTHPVSREVTRIRDSLF 490
Query: 457 FITPSQI 477
FIT +Q+
Sbjct: 491 FITGNQV 497
>UniRef50_Q6FJT7 Cluster: Similar to sp|P48563 Saccharomyces
cerevisiae YNL297c MON2; n=1; Candida glabrata|Rep:
Similar to sp|P48563 Saccharomyces cerevisiae YNL297c
MON2 - Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 1659
Score = 37.5 bits (83), Expect = 0.28
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Frame = +1
Query: 67 DAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETH 246
++I P + I +QLYP +NSK + L L TS S P+ + K+ +
Sbjct: 596 ESIVGPDLNKDIQKENDNIQLYPQSINSKQVSLFRAL----TSLAISLGPNFSAKS--WY 649
Query: 247 LLFEHWN---HLARVPSTVMYMK---PEKFQKLQQLNPNFASLINFRHTPKDITR-YPVS 405
LF WN + PS + E+F + AS+ N H+ D T+ YP+
Sbjct: 650 FLFTAWNWVYYFIYGPSNDILNSLNIDEEFISHDLSRNDLASIENTIHSFHDATKSYPLQ 709
Query: 406 NPHPVETEVAFMHDALMFITPSQILG---LFKDSPSMTSLY 519
+ TE+ + D + + P +G F +S ++Y
Sbjct: 710 TLIIMLTELEKLSDLTLNLNPKDQVGYQPFFNNSEFSVAIY 750
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 37.1 bits (82), Expect = 0.37
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 436 FMHDALMFITPSQILGLFKD-SPSMTSLYCSLIVPAEAAYGVPSLFPD-LYSYTIKDDQL 609
F HD L + I+ + PS+ +Y +++ P E G + D LY++ I DQ+
Sbjct: 181 FFHDELHYWKDESIIKMLSSLEPSV--VYATVVCPPELLIGAKQSYNDWLYTFEIIGDQI 238
Query: 610 VYTLEGNATGNYTQP 654
++ +G Y QP
Sbjct: 239 LFAPDGKMNSAYFQP 253
>UniRef50_Q4Q2P2 Cluster: Protein kinase, putative; n=3;
Leishmania|Rep: Protein kinase, putative - Leishmania
major
Length = 940
Score = 36.3 bits (80), Expect = 0.64
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 36 SRYSRQHHPPRRHNGSP-SGNRHQQFPSQASTLPISGKFQANPIAQSTR 179
SR+S +HH R+H +P SG+ H Q P Q + P + IA + R
Sbjct: 98 SRHSYRHHQGRQHGSTPRSGSGHSQSPEQPALRPQQATLGVSHIAPAAR 146
>UniRef50_A6SKK9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 902
Score = 36.3 bits (80), Expect = 0.64
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +3
Query: 48 RQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS 227
+Q PP + + +GNR +P + PISG + A P + +R H + S S S
Sbjct: 151 QQAFPPYQPHPMQNGNR--AYPPPGANRPISGVYAAQPPPNAIPNRDHGSYRVRSESSHS 208
Query: 228 *GHRNSP 248
GH P
Sbjct: 209 SGHGGIP 215
>UniRef50_Q5FSM3 Cluster: NADPH-dependent L-sorbose reductase; n=1;
Gluconobacter oxydans|Rep: NADPH-dependent L-sorbose
reductase - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 491
Score = 35.9 bits (79), Expect = 0.85
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +1
Query: 16 SMAFTNLVDT-LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVT 192
S ++L D+ L ++ RDA+T +V ++ NF H+ Y + + L Q G G+
Sbjct: 5 SQTLSHLPDSILTSSYDRDAVTPGIVHLSVGNF-HRAHQAVY--TDRALALAGQSGWGIV 61
Query: 193 SYGTSPHPHAAHKAIETH 246
G HP KA H
Sbjct: 62 GMGLMDHPAEVAKAEALH 79
>UniRef50_P10357 Cluster: 69 kDa protein; n=5; Turnip yellow mosaic
virus|Rep: 69 kDa protein - Turnip yellow mosaic virus
Length = 628
Score = 35.9 bits (79), Expect = 0.85
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 1/200 (0%)
Frame = +3
Query: 57 HPPRRHNGSPSGNRHQQFPSQAST-LPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS*G 233
H +R +P H F S T LP+ + Q RH + + R
Sbjct: 15 HDSQRSLSAPDSRIHSGFNSLLDTDLPMVHSEGTSTPTQLLRHPNIWFGNLPPPPRRPQD 74
Query: 234 HRNSPPV*TLESSCQSSFYGNVYET*EIPKTSAIKPKLCFPH*LQAHPKGHHSVPR*QPS 413
+R+ P+ L S +V+ET ++ +T K KL L P+ HS+P
Sbjct: 75 NRDFSPLHPLVFPGHHSQLRHVHETQQVQQTCPGKLKLSGAEELPPAPQRQHSLPLHITR 134
Query: 414 SCRN*SSVHARRSHVHYPFPNFRPFQGLPFHDLTLLFSHSPCRSRLWSAFTLP*SLQLHN 593
R HARR V P+ P ++ S R + LP + +H+
Sbjct: 135 PSRFPHHFHARRPDVLPSVPDHGPVLTETKPRTSVRQPRSATRGPSFRPILLPKVVHVHD 194
Query: 594 QR*SAGVHSRRKCYRQLHST 653
+ + R RQL T
Sbjct: 195 DPPHSSLRPRGSRSRQLQPT 214
>UniRef50_Q8CFA1-2 Cluster: Isoform 2 of Q8CFA1 ; n=3; Murinae|Rep:
Isoform 2 of Q8CFA1 - Mus musculus (Mouse)
Length = 574
Score = 34.7 bits (76), Expect = 2.0
Identities = 44/173 (25%), Positives = 62/173 (35%)
Frame = +1
Query: 82 PLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEH 261
PL+ H L +YPY N L L G + P P A L EH
Sbjct: 221 PLLGFCTGRQFHSL-IYPYMANGSLHDRLWAQG----NSDMLPWPQRASICSGLLLAVEH 275
Query: 262 WNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAFM 441
+ L + S V K Q LNP A + H T+Y V H + A++
Sbjct: 276 LHSLDIIHSNV---KSANVLLDQHLNPKLAHPVAHPHPDNKKTKYTVMRTHLFQASAAYL 332
Query: 442 HDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKD 600
+ FI Q+ ++ IV AE G+P++ D +KD
Sbjct: 333 PE--HFIRVGQL-------TKQVDIFSCGIVLAEVLTGIPAMDKDRSPVYLKD 376
>UniRef50_A5TXZ4 Cluster: Dipeptide ABC superfamily ATP binding
cassette transporter binding protein DppA; n=3;
Fusobacterium nucleatum|Rep: Dipeptide ABC superfamily
ATP binding cassette transporter binding protein DppA -
Fusobacterium nucleatum subsp. polymorphum ATCC 10953
Length = 495
Score = 34.3 bits (75), Expect = 2.6
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +1
Query: 136 YQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLF---EHWNHLARVPSTVMYMK 306
Y + ++P N+ + T+ GT P+ A ++ + +L E+W A++P+ + +
Sbjct: 159 YYMKEAIVPDENKDHLNDTAIGTGPYKIAEYQREQKLVLSKNEEYWGEKAKIPTVTILIS 218
Query: 307 PE---KFQKLQQLNPNFASLINFRHTPKDITRYPVSN 408
P F KL NF + I+ + P ++ +Y + N
Sbjct: 219 PNSETNFLKLLSGEINFLTNIDPKRIP-ELDKYQILN 254
>UniRef50_Q22WD6 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 335
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 EHWNHLARVPSTVMYMKPEKFQ-KLQQLNPNFASLINFRHTPKDITR 393
+++NHL P+ + + FQ + ++LNPNF L+ F+ K +T+
Sbjct: 230 QYFNHLLSHPNCINFQTQMLFQFEDKELNPNFKPLVEFQDKVKSLTQ 276
>UniRef50_Q5BE57 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 353
Score = 33.5 bits (73), Expect = 4.5
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +3
Query: 36 SRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 200
SR SRQ H HN SPS + H + Q +P+ A PI H LW
Sbjct: 37 SRQSRQRH--LTHNPSPSSSHHDRQRQQQQAVPLQQHINA-PIRPHIWHSKKRLW 88
>UniRef50_A6R238 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 695
Score = 33.5 bits (73), Expect = 4.5
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 48 RQHHP--PRRHNGSPSGNRHQQFPSQA--STLPISGKFQANPIAQSTRHRSHLLWHFTSS 215
RQHHP R H S S ++ + QA S+ +SG A PI+ RHR + H SS
Sbjct: 586 RQHHPLVARAHARSQSQSQRSRARQQAQWSSTSVSGSSVAGPISPLLRHR---IRH-PSS 641
Query: 216 SCRS 227
SC S
Sbjct: 642 SCTS 645
>UniRef50_A7HN20 Cluster: Putative uncharacterized protein; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: Putative
uncharacterized protein - Fervidobacterium nodosum
Rt17-B1
Length = 270
Score = 33.1 bits (72), Expect = 6.0
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 17/90 (18%)
Frame = +1
Query: 295 MYMKPEKFQKLQQLNPNFASLINFRHTPKD-----------ITRYPVSNPH----PVETE 429
MY PEK++ ++++ N + L+NF + KD +T Y SN H P E++
Sbjct: 1 MYFGPEKYKSIEKIEFNSSELLNFLESKKDRLDVYHRHVAVVTCY--SNEHSEINPTESQ 58
Query: 430 VAFMHDALMFITPS--QILGLFKDSPSMTS 513
F + +TPS +++GL +P T+
Sbjct: 59 KKFPFFMNLLVTPSNEKLIGLSISNPMSTN 88
>UniRef50_A7PYL4 Cluster: Chromosome chr12 scaffold_38, whole genome
shotgun sequence; n=8; core eudicotyledons|Rep:
Chromosome chr12 scaffold_38, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 625
Score = 33.1 bits (72), Expect = 6.0
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 193 SYGTSPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNF-ASLINFR 369
+YG S +A A HL+ WN VP+ +M+ + Q Q +P+F +
Sbjct: 440 AYGFSYLALSATAAFMQHLILYFWNRF-EVPALQRFMQNRRSQL--QPHPDFHITSSTIL 496
Query: 370 HTPKDITRYPVSNPHPVETEV 432
+ ITR NP PV TEV
Sbjct: 497 ASTLHITRLNTRNPGPVNTEV 517
>UniRef50_Q5CHK1 Cluster: Asparagine-rich protein; n=2;
Cryptosporidium|Rep: Asparagine-rich protein -
Cryptosporidium hominis
Length = 1243
Score = 33.1 bits (72), Expect = 6.0
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 27 HQFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKF-QANPIAQSTRHRSH 191
HQ ++ +QHH + H G Q P Q S I F Q + S+ H SH
Sbjct: 252 HQ-QQHQQQHHQQQHHQQQHQGQNTTQHPKQVSQRQIPSNFQQKHQTYSSSSHNSH 306
>UniRef50_Q6FXI9 Cluster: Similar to sp|P39985 Saccharomyces
cerevisiae YEL055c POL5 DNA polymerase V; n=1; Candida
glabrata|Rep: Similar to sp|P39985 Saccharomyces
cerevisiae YEL055c POL5 DNA polymerase V - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 1021
Score = 33.1 bits (72), Expect = 6.0
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 439 MHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAY--GVPSLFPDLYSYTIKD 600
+H +F P Q L+ S TSLY S I+ A Y GV D YS TIK+
Sbjct: 937 IHQDFLFAKPGQFPILYYSVCSSTSLYFSKILVDNADYQQGVYETLVDTYSTTIKE 992
>UniRef50_UPI000150A116 Cluster: Cullin family protein; n=1;
Tetrahymena thermophila SB210|Rep: Cullin family protein
- Tetrahymena thermophila SB210
Length = 752
Score = 32.7 bits (71), Expect = 7.9
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 303 HIHYRRRNSGKMIPMFKQEVSFYGLMSGMRMR*SAIGGDSYAELI-EQWD*LGIYLIWVK 127
H + + R ++ F Q++ Y L + + + + G+ Y E + E+W L +YL W+K
Sbjct: 42 HCYEQNREEMQLFDWFSQQMEQY-LDNQFQRKIQVLTGEEYLEKVKEEWQNLQLYLFWLK 100
>UniRef50_Q8CDV4 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:4921513B05 product:hypothetical
RING finger containing protein, full insert sequence;
n=2; Murinae|Rep: Adult male testis cDNA, RIKEN
full-length enriched library, clone:4921513B05
product:hypothetical RING finger containing protein,
full insert sequence - Mus musculus (Mouse)
Length = 233
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 18 HGFHQFSRYSRQH-HPPRRHNGSPSGN-RHQQFP 113
H +H+F RY +H HPP H G P R Q +P
Sbjct: 137 HQYHRFGRYRHRHRHPPIFHRGPPHPPVRRQLYP 170
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 7.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 100 WRFPLGEPLWRLGGWC 53
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
>UniRef50_Q9VCM2 Cluster: CG4374-PA; n=1; Drosophila
melanogaster|Rep: CG4374-PA - Drosophila melanogaster
(Fruit fly)
Length = 858
Score = 32.7 bits (71), Expect = 7.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 27 HQFSRYSRQHH--PPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 200
HQ + Q+H PP HNG + N + Q PI+ + Q + TR S+ +
Sbjct: 58 HQQQQQHHQNHQQPPHSHNGHNNNNNNNNNHVQVVHQPITSQSQQQSLCGGTRTNSNNMI 117
Query: 201 H 203
H
Sbjct: 118 H 118
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,686,548
Number of Sequences: 1657284
Number of extensions: 16435531
Number of successful extensions: 41736
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 39765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41639
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -