Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0471
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 29 0.59
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 27 3.1
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 26 4.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 4.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.1
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 26 4.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.5
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 25 9.5
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 9.5
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 274 QDDSNVQTGGEFLWPYERHEDEVKCH 197
QD+SN+ G F++PY R K H
Sbjct: 89 QDESNISAGSSFMFPYNRGHPLSKRH 114
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 72 HNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTR 179
+NG PSG R + ST IS F P A +R
Sbjct: 10 NNGLPSGEREESETPGGSTSIISSSFLLQPRASDSR 45
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 469 SQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYTL 621
S L +F +SP TS Y ++ A+ + + P L SY+ + + V L
Sbjct: 586 SPFLHIFNNSPDETSFYRHMLNVADVNDSLIMIQPTLQSYSFNEPEGVPVL 636
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 382 DITRYPVSNPHPVETEVAFMHDALMFITPSQI 477
D P+S PH + T ++DA + + P Q+
Sbjct: 179 DFNIQPLSVPHEIITSYGLVNDAWLSVYPDQV 210
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 130 YPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARVPST 291
+P Q+N+ + L++ LG+ V G H + +H H NH +P+T
Sbjct: 444 HPPQMNTDQLLLVSFLGLVVNLVGILAFNHGHNHDHGSHHHHSHSNHSMCLPNT 497
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +3
Query: 30 QFSRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLWHFT 209
Q S S ++ + SG+RH + S +LP K Q + R + HF
Sbjct: 16 QLSNTSSTESSSSNNSSTASGSRHVKIESNRVSLP-PLKIQKGSF-PAIRQPTESSTHFQ 73
Query: 210 SSSCRS*GHRNSP 248
SS S H SP
Sbjct: 74 SSHSVSNAHNQSP 86
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 115 HKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEH 261
H+++L+P+ ++ + +LGI VT+Y + + +++ + L EH
Sbjct: 188 HQMELHPFLPQTEFVEKHKKLGIHVTAYSPFGNQNTIYES-KIPKLIEH 235
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = -2
Query: 512 EVMEGESLKRPKIWEGVMNMRASCMN 435
+ M+G ++ P+ +G++N+ C+N
Sbjct: 610 KTMDGSKIEPPESSKGILNVNLGCVN 635
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 196 YGTSPHPHAAHKAIETHLLFEH 261
Y S H H H + LLFEH
Sbjct: 176 YAGSEHTHIGHSHNPSQLLFEH 197
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 297 HYRRRNSGKMIPMFKQEVSFYG 232
+ +RRN+GKM P F+ V G
Sbjct: 343 YLKRRNNGKMAPEFRVPVILLG 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,849
Number of Sequences: 5004
Number of extensions: 68310
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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