Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0471
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 32 0.35
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 32 0.46
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 0.80
02_05_1335 - 35770403-35770543,35770630-35770755,35770859-357709... 30 1.9
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 2.4
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 26 3.0
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.2
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 29 3.2
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 28 5.6
06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504... 28 5.6
04_03_0447 + 16015043-16015489,16017358-16017530,16017906-160180... 28 5.6
03_06_0101 + 31653860-31654327 28 7.5
03_05_0927 - 28874819-28877098,28877689-28877691 28 7.5
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 204
F L + A+TI R P+ TA+ + + L+ + ++IPL +LGIG+ Y
Sbjct: 156 FVGLSEASADTIRRAHAVYPI--TAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 210
Query: 205 SPHPHAAHKAIETHLLFEHW 264
A +A + E W
Sbjct: 211 IGRGFFAGRAAVQSIPSESW 230
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +1
Query: 331 QLNPNFASLINFRHTPKDITRYPVSNPHPV-------ETEVAFMHDALMFITPSQILGLF 489
+++P+ SL+++ PK R+PVS+P+ + E++ A++H L I +++ F
Sbjct: 309 EIDPSVPSLLDYYPLPKRGERFPVSDPNMMPRLQPRPESDTAYLHGILESIARIEVISFF 368
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 36 SRYSRQHHPPRRH-----NGSPSGNRHQQFPSQASTLPISGKFQANPIAQSTRHRSHLLW 200
SR SR + PP RH + SPS + H ++ S S K+ + +S R R
Sbjct: 538 SRRSRSYSPPVRHTRGRRSRSPSRSYHSKYGSDRSYRDDRDKYGRSGRRESDRSRD---- 593
Query: 201 HFTSSSCRS*GHRNSP 248
H++SSS R+ SP
Sbjct: 594 HYSSSSRRNRSRSISP 609
>02_05_1335 -
35770403-35770543,35770630-35770755,35770859-35770942,
35771444-35771656,35771759-35771977
Length = 260
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 48 RQHHPPRRHNGSPSGNRHQQFPSQ-ASTLPISGKFQANPIAQSTRH 182
RQH R+H+ S S +H++ S T P+ N S+RH
Sbjct: 198 RQHRSERKHSSSASTTKHKRKSSSLKDTSPVGRTIDFNGADSSSRH 243
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = +1
Query: 331 QLNPNFASLINFRHTPKDITRYPVSNPHPVETEVAFMHDALMFITPS 471
Q +P+ L+NFRH K T P P T HD F PS
Sbjct: 223 QADPSVELLVNFRHGLKVETNGLAPPPPPPPTTTTNFHDDQHFCFPS 269
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 25.8 bits (54), Expect(2) = 3.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 111 PSQASTLPISGKFQANPIAQSTRHRSHLLWHFTSSSCRS*GHRNS 245
P T P++ + A S R +S + ++SSS S GH+ S
Sbjct: 127 PRPEETTPVTAPAPSAVTADSPRKKSFWSFLYSSSSSSSGGHQGS 171
Score = 21.8 bits (44), Expect(2) = 3.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 36 SRYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPI 137
S S HPP S + H S +S+LP+
Sbjct: 66 SSKSSPFHPPPASASSSTPTSHVAAESSSSSLPL 99
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 42 YSRQHHPPRRHNGSPSGNRHQQFPSQA 122
+ R H PP H PS Q+FP +A
Sbjct: 176 HDRHHEPPMSHKKFPSSAGEQRFPDRA 202
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGT 204
+ L + +TI R P+ TA+ + + L+ + +++PL +LGIG+ Y
Sbjct: 188 YIGLSEASPDTIRRAHAVHPI--TAV---QMEWSLWARDIEPEIVPLCRELGIGIVPYSP 242
Query: 205 SPHPHAAHKAIETHLLFE-----HWNHLAR--VPSTVMYMKPEKFQKLQQLNPNFASLIN 363
+ + L E H A + +Y+K E+ K Q +P +L
Sbjct: 243 IARGFFGGRGVTEQLSAESNLQGHPRFSAENLEKNKQLYLKTEELAKKHQCSPAQLALAW 302
Query: 364 FRHTPKDITRYP 399
H D+ P
Sbjct: 303 VLHQGDDVVPIP 314
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 486 FQGLPFHDLTLLFSHSPCRSRLWS 557
F G+PF D ++FS+ P + WS
Sbjct: 175 FDGVPFPDTDMVFSYKPRKDPKWS 198
>06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,
5042649-5046148
Length = 1437
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 160 PLLNQLGIGVTSYGTSPHPHAAHKAIET 243
P + + I +TSYGTS HP A K + +
Sbjct: 1059 PTIATMHILMTSYGTSGHPDEAEKVLNS 1086
>04_03_0447 +
16015043-16015489,16017358-16017530,16017906-16018008,
16018177-16018521
Length = 355
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
+ L + A+TI R + P+ I + L+ V ++P +LGIG+ +Y
Sbjct: 164 YIGLSEASASTIRRAHVVHPITAVQI-----EWSLWSRDVEEDIVPTCRELGIGIVAY 216
>03_06_0101 + 31653860-31654327
Length = 155
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 466 PSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFP 573
P++ LG +D C+ VPA+AA+G P P
Sbjct: 15 PARALGRARDMYVRGMTGCARCVPADAAFGYPVFVP 50
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 247 LLFEHWNHLARVPSTVMYMKPEKFQKLQ 330
L+ EH NH PS V Y+ PE++ +L+
Sbjct: 121 LIKEH-NHAVAAPSIVRYVAPEEYAQLE 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,802,466
Number of Sequences: 37544
Number of extensions: 474036
Number of successful extensions: 1092
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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