Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0471
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 39  RYSRQHHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAN 158
           +   + HPP+ H GSP      Q P      P  G+F  N
Sbjct: 527 KVEHEQHPPQSH-GSPHPGPQYQGPPPRKEFPTPGRFVTN 565


>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +1

Query: 142 VNSKLIPLLNQLGIGVTSYGTSPHPHAAHKAIETHLLFEHWNHLARV-PSTVMYMKPEKF 318
           V S   P+LN      T+ G+S     A  A +TH++ +    L+ V PS ++       
Sbjct: 357 VPSMFAPMLNSPAPSSTTSGSSSRTSGASLAHKTHIVGKGGISLSTVDPSPILSPGIRLS 416

Query: 319 QKLQQLNPNFASLINFRHT--PKDITRYPVSNPHPVETE 429
           ++L   N ++ S    + T   + I+ Y   N  P+ ++
Sbjct: 417 EQLGAKNQSYKSAFRVQKTENARVISHYHAPNEIPLSSD 455


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 121 LQLYPYQVNSKLI-PLLNQLG-IGVTSY--GTSPHPHAAHKAIETHLLFEHWNH 270
           L L+ +   S +I P+L+  G   +T++  GT    +AAH     HLL  +W H
Sbjct: 55  LSLWMFNCGSSVIHPILSIFGAFFITNFMAGTDASIYAAHIVFLGHLLIGYWFH 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,286,914
Number of Sequences: 27780
Number of extensions: 386927
Number of successful extensions: 1074
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)