Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0471
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65330.1 68418.m08218 MADS-box family protein contains Pfam p... 30 1.5
At5g42130.1 68418.m05129 mitochondrial substrate carrier family ... 30 1.5
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 30 1.5
At3g12420.1 68416.m01547 hypothetical protein 29 2.0
At1g60690.1 68414.m06832 aldo/keto reductase family protein cont... 28 4.7
At3g24600.1 68416.m03090 hypothetical protein 28 6.2
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 28 6.2
At1g60710.1 68414.m06834 aldo/keto reductase family protein cont... 28 6.2
At1g10810.1 68414.m01241 aldo/keto reductase family protein cont... 28 6.2
At5g41170.1 68418.m05004 pentatricopeptide (PPR) repeat-containi... 27 8.2
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot... 27 8.2
>At5g65330.1 68418.m08218 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL78
Length = 341
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 301 MKPEKFQKLQQLNPNFASLINFRHTPKDITRYPVSNPH 414
+ P + Q LNP+ SL + H +++ P+S PH
Sbjct: 147 LTPSYLNQTQHLNPSKFSLFMYNHGDATLSQLPLSAPH 184
>At5g42130.1 68418.m05129 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 412
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 205 SPHPHAAHKAIETHLLFEHWNHLARVPSTVMYMKPEKFQKLQQLNPNFASLINFRHTPKD 384
SP+ + H E + LF H++ L V S ++ P+ K Q P F++ NFR +
Sbjct: 13 SPNLNHCHFPNEFNSLFTHFSDLTSVQSPIV-RNPKLKTKSSQKPPKFSA--NFRRSDPP 69
Query: 385 ITRYPVSNP 411
+S+P
Sbjct: 70 FASTSISDP 78
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 84 PSG-NRHQQFPSQASTLPISGKFQANPIAQSTRHRS 188
PSG +HQQ P+Q+S P S +P+AQ+ + S
Sbjct: 216 PSGMTQHQQRPTQSSLRPASSTSTQSPVAQNFQGHS 251
>At3g12420.1 68416.m01547 hypothetical protein
Length = 308
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 39 RYSRQHHPPRRHNGSPSGNRH---QQFPSQASTLPISGKFQANPIAQSTRHRSH 191
RY HHPPR ++ +P NR+ P P ++ AN + + R+ H
Sbjct: 79 RYYSDHHPPRSYDPNPPPNRYYSDHHPPRSYDRNPPPNRYDANDLPPN-RYYDH 131
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 36 SRYSRQHHPPRRHNGSPSGNRH 101
+RY HHPPR ++ +P NR+
Sbjct: 97 NRYYSDHHPPRSYDRNPPPNRY 118
>At1g60690.1 68414.m06832 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 345
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
+ L + A+TI R P+ TA+ + + L+ V +++P +LGIG+ SY
Sbjct: 156 YIGLSEASASTIRRAHTVHPI--TAV---QLEWSLWTRDVEEEIVPTCRELGIGIVSY 208
>At3g24600.1 68416.m03090 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 58 IHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSYGTSPHPHAAHK 231
IH + T L +A++ +L+ Y SK I ++ G V YG PH A+ K
Sbjct: 391 IHVSSSTFKLTFSALTLATGQLKSYYQPRKSKHISIVKLTGAEVPLYGAGPHLAASDK 448
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 37 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLL 168
+ ++ N I +DA A L + + N L+L PY +K + LL
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLL 347
>At1g60710.1 68414.m06834 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 345
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
+ L + A+TI R P+ I + L+ V ++IP +LGIG+ +Y
Sbjct: 156 YIGLSEASASTIRRAHAVHPITAVQI-----EWSLWTRDVEEEIIPTCRELGIGIVAY 208
>At1g10810.1 68414.m01241 aldo/keto reductase family protein
contains Pfam profile PF00248: oxidoreductase, aldo/keto
reductase family
Length = 344
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 25 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQLGIGVTSY 198
+ L + A+TI R PL TA+ + + L+ V +IP +LGIG+ +Y
Sbjct: 156 YIGLSEACASTIRRAHAVHPL--TAV---QLEWSLWSRDVEEDIIPTCRELGIGIVAY 208
>At5g41170.1 68418.m05004 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 527
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 439 MHDALMFITPSQILGLFKDSPSMTSLYCSLIVPAEAAYGVPSLFPDLYSYTIKDDQLVYT 618
M +A+ + +G+ D T++ SL Y + SLF + +Y I+ D ++YT
Sbjct: 158 MEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL-SLFDQMENYGIRPDVVMYT 216
>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
contains Pfam profile: PF00450 serine carboxypeptidase;
similar to serine carboxypeptidase I precursor
(SP:P37890) [Oryza sativa]
Length = 436
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 429 FSFYRMRVANGVPSDVLWGVPEVNEGSKVWV*LLKFLEFLRFHIHYRRRN-SGKMIPMFK 253
FS+ R A+ +PSD V VNE + W L K E+ + + SGK+IP
Sbjct: 134 FSYSRNPFAD-IPSDT-GSVKRVNEFVRKW--LAKHPEYFSNPFYVTGNSYSGKVIPAIV 189
Query: 252 QEVS 241
QE+S
Sbjct: 190 QEIS 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,665,708
Number of Sequences: 28952
Number of extensions: 371475
Number of successful extensions: 948
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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