Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0469
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 261  YLEELAEATKPRIHIDFEALEQALFERLLLQD-VESNVIPKGTKVYKEH 404
            Y E+        IH   ++LE ++ ER+LL    ++NV        K H
Sbjct: 3325 YFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSH 3373


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 370 TLDSTSCKSNLSKSACSNASKSM*MRGLVASASSSKYTN 254
           T  +TS  S+ S S+ S++SKS       +S SSS+ T+
Sbjct: 140 TPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTS 178


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 361 STSCKSNLSKSACSNASKSM*MRGLVASASSSKYTN 254
           S+S  S+ SKS+ S++S S       +S SSSK+++
Sbjct: 188 SSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSS 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,731
Number of Sequences: 5004
Number of extensions: 36422
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)