Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0469
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)                     29   1.9  
SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)                29   3.4  
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      29   3.4  

>SB_44500| Best HMM Match : DUF1693 (HMM E-Value=4)
          Length = 553

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 249 KQLVYLEELAEATKPRIHIDFEALEQALFERLLLQDVESNVIPKG 383
           K+ VYL + A  ++  + + F  ++QAL ERL +Q   +NV+  G
Sbjct: 130 KRCVYLRDSALDSETSL-LSFANIDQALLERLTMQYPRNNVVITG 173


>SB_32935| Best HMM Match : ATP-synt_8 (HMM E-Value=8.5)
          Length = 133

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 18  CNNFL*MTSILNSSKNINHTVYIYSKFYHCHFSELS 125
           CN+++ ++S  +SS +I+  + I  + YH H S LS
Sbjct: 73  CNHYIVISSSSSSSSSISVIIIITHRHYHHHPSPLS 108


>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 146 CPG**RNRNCKQHRRKCFLLYHKCKC-SRKSAQ**KTVSIFRRTC 277
           C G  + R CK+  RKC +   KCK  +RK  +  +   +  R C
Sbjct: 48  CKGKVQTRKCKEQTRKCKVQTRKCKVQTRKCKKQTRKCKVQTRKC 92


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 146 CPG**RNRNCKQHRRKCFLLYHKCKC-SRKSAQ**KTVSIFRRTC 277
           C G  + R CK+  RKC +   KCK  +RK  +  +   +  R C
Sbjct: 48  CKGKVQTRKCKEQTRKCKVQTRKCKVQTRKCKKQTRKCKVQTRKC 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,505
Number of Sequences: 59808
Number of extensions: 250326
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)