Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0469
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07981.1 68415.m01008 hypothetical protein                          32   0.30 
At1g58350.1 68414.m06637 expressed protein contains Pfam profile...    29   2.1  
At2g08986.1 68415.m01009 hypothetical protein                          28   3.6  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    28   4.8  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    27   8.4  

>At2g07981.1 68415.m01008 hypothetical protein
          Length = 413

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 225 VENRPNNEKQLVYLEELAEATKPRIHIDFEALEQAL 332
           VE +P  + + V +E L E TKP+ HIDF    +AL
Sbjct: 250 VELKPQPDLKGVRIESLLEDTKPKTHIDFGYTMKAL 285


>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
           PF05057: Protein of unknown function (DUF676);
           supporting cDNA gi|6520166|dbj|AB028199.1|
          Length = 794

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 268 KNLLKQLNLAFT*TSKHWNRHFSKDYFCKMLSLM 369
           +N L+ LN+ F  TS  W    SKD+  ++  L+
Sbjct: 310 QNSLENLNITFDLTSDDWLHELSKDHLSRIFHLL 343


>At2g08986.1 68415.m01009 hypothetical protein
          Length = 1218

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 VENRPNNEKQLVYLEELAEATKPRIHIDFEALEQAL 332
           VE +P  + + +  + L E TKP+ H DF+   +AL
Sbjct: 545 VELKPQPDLKSLSSDSLLEDTKPKTHTDFDYTMKAL 580



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225  VENRPNNEKQLVYLEELAEATKPRIHIDFEALEQAL 332
            VE +P  + + V +E L E TKP+ H+D     +AL
Sbjct: 1130 VELKPQPDLKGVRIESLLEDTKPKTHMDLGYTMKAL 1165



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 VENRPNNEKQLVYLEELAEATKPRIHIDFEALEQAL 332
           VE +P  + + V +  L E TKP+ H+DF    +AL
Sbjct: 237 VELKPQPDLKGVRIVSLLEDTKPKTHMDFGYTMKAL 272



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 225  VENRPNNEKQLVYLEELAEATKPRIHIDFEALEQAL 332
            VE +P  + + V +  L E TKP+ H+DF    +AL
Sbjct: 1020 VELKPQLDLKGVRIVSLLEDTKPKTHMDFGYTMKAL 1055


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 427 RKTCFSMTCSL*TLV-PFGITLDSTSCKSNLSKSAC 323
           RK    M C    L+ P G    +TSCKS++ K  C
Sbjct: 55  RKQITKMMCMKCLLIQPIGANCSNTSCKSSMGKYFC 90


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 276 AEATKPRIHIDFEALEQALFERLLLQDVESNVIPKGT 386
           AEA + R+  DFE   Q L  +   +  +SNVI  GT
Sbjct: 129 AEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGT 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,067,929
Number of Sequences: 28952
Number of extensions: 174364
Number of successful extensions: 477
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)