Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0467
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    26   4.4  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    26   4.4  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    26   4.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.6  

>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 537 RFPPIESERVIAGE 496
           RFPP+E E+ +AGE
Sbjct: 241 RFPPVEHEKSVAGE 254


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 344 SKCRTGRVLCSAGMNGDVYCR--RTRQVVEVKKSNNPQNMCNYW 469
           S   T + LC        Y +  R  QV+  KKS N Q   N W
Sbjct: 367 SPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEW 410


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 196 CIERSTPAGQCRSYMILYLPRC 261
           C+    P   C  Y +LY+P C
Sbjct: 128 CVLPDPPTPSCLKYTLLYMPHC 149


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
 Frame = +2

Query: 344 SKCRTGRVLCSAGMNGDVYCR--RTRQVVEVKKSNNPQNMCNYW 469
           S   T + LC        Y +  R  QV+  KKS N Q   N W
Sbjct: 367 SPSETEQFLCDLIAKHHFYAKIDRPAQVISFKKSQNVQEQLNEW 410


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 301 LHDVIY*SRKSFVYNVASTVSYKIGTGLRELIAQ 200
           +  V+Y  R     NV  ++SY+ G+ LR ++ Q
Sbjct: 558 ISSVLYADRCIISRNVVESISYRYGSDLRGILMQ 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,511
Number of Sequences: 5004
Number of extensions: 53468
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)