Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0467
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0225 - 15587557-15588774                                         31   0.85 
10_08_0742 + 20244984-20247008                                         29   2.6  
12_01_1020 - 10407397-10407507,10407927-10407979,10408005-104081...    28   7.9  
04_04_1367 - 32974757-32975499,32975957-32976179                       28   7.9  

>03_03_0225 - 15587557-15588774
          Length = 405

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 409 PPTINVAI---HPGAAQHPASPTLGAHVNF 329
           PP + VA+   HPGAA HPA+P       F
Sbjct: 140 PPPVAVAVPHAHPGAASHPAAPAAAESPEF 169


>10_08_0742 + 20244984-20247008
          Length = 674

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +2

Query: 323 YKEIYVSSKCRTGRVLCSAGMNGDVY---CRRTRQVVEVKK--SNNPQNM 457
           Y+E+Y+++K      L  AG  G+VY    RR+  VV VK+  SN  Q M
Sbjct: 346 YRELYMATKGFKNSELLGAGGFGEVYRGVLRRSGDVVAVKRISSNGRQGM 395


>12_01_1020 -
           10407397-10407507,10407927-10407979,10408005-10408122,
           10408405-10408407
          Length = 94

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 627 PYRQTSRRPT*VVTD--DSNASGRAKPLPTNPRFPPIESE 514
           PYRQ S +P+ ++    D        PLP +P  PP+  +
Sbjct: 17  PYRQWSSKPSLILRRLIDMVVQSSVLPLPLSPHSPPLRQQ 56


>04_04_1367 - 32974757-32975499,32975957-32976179
          Length = 321

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 318 RQFEFYYMM-LFIDRGSRSCTTWQVQYHIR 232
           ++ ++Y+ +   ID G+ SC  ++VQ HIR
Sbjct: 3   QELDYYWSLGTDIDNGTESCLIYKVQQHIR 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,518,393
Number of Sequences: 37544
Number of extensions: 352356
Number of successful extensions: 850
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)