Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0467
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54675| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   2.6  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_54675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -1

Query: 502 RGVTWTVCPTTPIVTHILRVIRFFYFYYLSCPPTINVAIHPGAAQHPASPT 350
           R +T +VC       H LR IR    Y L  P  I V  HP     P  P+
Sbjct: 230 RVITSSVCWYIGSSIHRLRSIRTLSVYILDHPYFIGVQFHPEYISRPLKPS 280


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 196 CIERSTPAGQ-CRSYMILYLPRCTRTTSSINK*HHVIKF-KLTLV*GNLRELQVSDWQGV 369
           C+ R     Q  R+Y    LPRCT T   I     V K  ++ L  G+L   Q   W+ V
Sbjct: 432 CVNRDGQEIQGTRTYSYTGLPRCTHTAPDIGLLLFVPKMTRVMLEGGSLTRCQQKYWEAV 491

Query: 370 VQRRDE 387
              R E
Sbjct: 492 SNPRPE 497


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 648 IFYITFLPY--RQTSRRPT*VVTDDSNASGRAKP-LPTNPRFPPIESERVIA 502
           +F + F+ +  RQ    P   V D   A   A+P LP  PR+PPI S   IA
Sbjct: 7   LFSLLFVVHVGRQVHGAPDGDVEDTMIAEDEARPVLPDAPRYPPINSGDKIA 58


>SB_47365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 621 RQTSRRPT*VVTDDSNASGRAKP-LPTNPRFPPIESERVIA 502
           RQ    P   V D   A   A+P LP  PR+PPI S   IA
Sbjct: 428 RQVHGAPDGDVEDTMIAEDEARPVLPDAPRYPPINSGDKIA 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,812,759
Number of Sequences: 59808
Number of extensions: 426998
Number of successful extensions: 1101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)