Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0467
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 327 LYKRQFEFYYMMLFI 283
           L+KR+F +Y + ++I
Sbjct: 236 LFKREFSYYLIQIYI 250


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 327 LYKRQFEFYYMMLFI 283
           L+KR+F +Y + ++I
Sbjct: 236 LFKREFSYYLIQIYI 250


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  IYFYICCMFKIC 79
           I +Y CC +KIC
Sbjct: 483 IGYYPCCWWKIC 494


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  IYFYICCMFKIC 79
           I +Y CC +KIC
Sbjct: 536 IGYYPCCWWKIC 547


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 401 CRRTRQVVEVKKSNNPQNMCNYWCCRAHG 487
           CR  +  +  K+  N    C Y  C A G
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMG 174


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 401 CRRTRQVVEVKKSNNPQNMCNYWCCRAHG 487
           CR  +  +  K+  N    C Y  C A G
Sbjct: 146 CREEKSCIIDKRQRNRCQYCRYQKCLAMG 174


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 421 YLSCPPTINVAIHP 380
           Y +CPPT+   ++P
Sbjct: 210 YTACPPTLACPLNP 223


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 391 RRLLSEDKTSSRS 429
           RRL+SEDK  S+S
Sbjct: 789 RRLMSEDKRLSKS 801


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,641
Number of Sequences: 438
Number of extensions: 4475
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)