Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0467
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15670.1 68414.m01881 kelch repeat-containing F-box family pr...    32   0.40 
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    28   4.9  
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ...    28   4.9  
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ...    28   4.9  

>At1g15670.1 68414.m01881 kelch repeat-containing F-box family
           protein similar to SP|Q9ER30 Kelch-related protein 1
           (Sarcosin) {Rattus norvegicus}; contains Pfam profiles
           PF01344: Kelch motif, PF00646: F-box domain
          Length = 359

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +2

Query: 329 EIYVSSKCRTGRVLCSAGMNGDVY--CRRTRQVVE----VKKSNNPQNMCN 463
           E ++SS+      +C+AG NGD+Y  CRR   +++     K  N P ++CN
Sbjct: 252 EEFLSSEMTMWPPICAAGENGDLYACCRRDLMMMKDDTWYKVGNLPADVCN 302


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 437 SNNPQNMCNYWCCRAHGPRHSPAITRSDSIGGKRGFV 547
           S    ++C Y  C  HG RHS A   +  +   + FV
Sbjct: 222 SKRSNDVCTYRYCSLHGRRHSHAADNNAGVPSLKRFV 258


>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 559 GSAAGIAVVGNYSGGPSA 612
           G+A GI+  G YSGGP A
Sbjct: 281 GAAGGISAYGGYSGGPPA 298


>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 404

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 559 GSAAGIAVVGNYSGGPSA 612
           G+A GI+  G YSGGP A
Sbjct: 281 GAAGGISAYGGYSGGPPA 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,865
Number of Sequences: 28952
Number of extensions: 276477
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)