Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0465
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 59 6e-10
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 29 0.39
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.91
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.6
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 27 2.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 3.7
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 3.7
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 25 8.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 8.5
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 25 8.5
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy... 25 8.5
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 25 8.5
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 58.8 bits (136), Expect = 6e-10
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 6/195 (3%)
Frame = +1
Query: 25 VNSDRVVLKGPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVKDITA 204
V + ++G K+ +E ARI IE L + IP HR ++G+ G V+ +
Sbjct: 765 VEEGHIRIQGIKKNVEETAARIKSQIEALIDDTILRVNIPNDFHRQLIGSNGKYVRRLEE 824
Query: 205 EFDVQIKFPERDTTEGADVPGRDIDENAEPGPNDIIKITGRPENCEGAKKALLE------ 366
+F V+++FP D + ++ G ++ + P D + I G ++ AK+ LLE
Sbjct: 825 KFSVRVRFPRED--DSSNSTGNELMKPTSP---DEVVIRGGKKSVAAAKQELLELYEYEK 879
Query: 367 QVPITIDVEVPNELHRLLXGQKRRELMQTYDVHXLLPPNEDTSDIVKVTGTPTSVENAKQ 546
+ T +++P++ + G R ++ D D+ TP SV AK
Sbjct: 880 SIAYTSTIDIPSKAVSRVVG---RNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKA 936
Query: 547 ALTEKIAEMEKEKED 591
+ I E+ E+
Sbjct: 937 DVENAIKEISAIAEE 951
Score = 56.8 bits (131), Expect = 2e-09
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Frame = +1
Query: 4 ISFPRQGVNSDR--VVLKGPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGAR 177
ISF +R VVL+G KE +E + R+ EI+E+L+ +V + +PQR +++G
Sbjct: 998 ISFSNGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGRM 1057
Query: 178 GAKVKDITAEFDVQIKFPERDTTEGADVPGRDIDENAEPGPNDIIKITGRPENCEGAKKA 357
G+ +DI ER T+ ++P +P I I G PENCE AK+
Sbjct: 1058 GSTRRDI-----------ERKTSTMLNIP-----NVLDPEETVTITIVGSPENCEKAKEM 1101
Query: 358 LLEQV 372
+ E+V
Sbjct: 1102 IQEKV 1106
Score = 46.0 bits (104), Expect = 4e-06
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%)
Frame = +1
Query: 40 VVLKGPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVKDITAEFDVQ 219
V ++G K +E A I+ I E+++ V I + +HR ++G G+K+++ E
Sbjct: 929 VSVRGAKADVENAIKEISAIAEEVKNLVEKVIKIDREYHRYLIGPNGSKLQNTIKECG-- 986
Query: 220 IKFPERDTTEGADVPGRDIDENAEPGPNDIIKITGRPENCEGAKKALLEQV-----PITI 384
D TE A + + N+E N ++ + G E E + LLE V +
Sbjct: 987 ---GSTDKTETARLISFS-NGNSEEERNSVV-LRGDKEIVEALETRLLEIVEELKNQVEE 1041
Query: 385 DVEVPNELHRLLXGQ---KRRELMQTYDVHXLLPPNEDTSDIVKVT--GTPTSVENAKQA 549
+EVP + G+ RR++ + +P D + V +T G+P + E AK+
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEETVTITIVGSPENCEKAKEM 1101
Query: 550 LTEKIA 567
+ EK+A
Sbjct: 1102 IQEKVA 1107
Score = 37.9 bits (84), Expect = 0.001
Identities = 34/178 (19%), Positives = 74/178 (41%), Gaps = 4/178 (2%)
Frame = +1
Query: 40 VVLKGPKECIEVAKARINEIIEDLEAKVTIECV-IPQRHHRTVMGARGAKVKDITAEFDV 216
+ ++G E +E+A+ I II + + T+ I + + G G +K++ D+
Sbjct: 300 ITIEGDFEGVELAQKDIEAIINERTSNTTVRISHISTELYSLLRGPDGKNIKELEEGRDL 359
Query: 217 QIKFPERDTTEGADVPGRDIDENAEPGPNDIIKITGRPENCEGAKKALLEQVPITIDVEV 396
+++ P A V + + + G+ A++ L +P + +
Sbjct: 360 KVQIPFAYLDPSAPVNPIVLSGEKSAVRECALYLQGQ------AEELLRTTIPTMLPI-- 411
Query: 397 PNELHRLLXGQKR---RELMQTYDVHXLLPPNEDTSDIVKVTGTPTSVENAKQALTEK 561
P HR + G+K +++++ +LPP SD+V V G ++ + E+
Sbjct: 412 PRRQHRFINGEKGVGIQDILRKSGCSVILPPINGDSDVVSVRGPALNISEGIRLTLER 469
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.39
Identities = 30/89 (33%), Positives = 44/89 (49%)
Frame = -1
Query: 365 SSRAFLAPSQFSGRPVILIMSLGPGSAFSSISLPGTSAPSVVSRSGNFI*TSNSAVMSLT 186
+S AF PS FS P L+ S G+ F S P +S+PS + SN++ S
Sbjct: 185 TSAAF--PSSFSSLP--LVSSKPTGTPFVPKS-PPSSSPSTTN-------VSNASTSSAP 232
Query: 185 LAPRAPMTVR*CLCGITHSIVTFASKSSI 99
+ PRAP T R + + S + + S SS+
Sbjct: 233 INPRAPQTRRESIS--STSSIHYCSSSSL 259
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.3 bits (60), Expect = 0.91
Identities = 25/84 (29%), Positives = 39/84 (46%)
Frame = -1
Query: 347 APSQFSGRPVILIMSLGPGSAFSSISLPGTSAPSVVSRSGNFI*TSNSAVMSLTLAPRAP 168
+P +SG P++ S P S +S P S P+V+S S NF + + L PR
Sbjct: 273 SPQPYSG-PILA--STAPTLDGSYLSNPSNSNPAVMSLSSNFP-SPPKPNNPVYLPPRGN 328
Query: 167 MTVR*CLCGITHSIVTFASKSSII 96
TV + + SI +F S + +
Sbjct: 329 PTVNDRVSNVLPSITSFDSSVTTV 352
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 484 EDTSDIVKVTGTPTSVENAKQALTEKIAEMEKEKED 591
EDT + T +P + + + ++ K+AEMEK+K +
Sbjct: 1095 EDTKNSYDQT-SPEATQERNRTISSKLAEMEKQKNE 1129
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 168 HDSSVMSLWNHTFNRYLRFQILNNFIDSCFS 76
HD + +L H FNR+ F +++ F+ FS
Sbjct: 716 HDDNTFTL--HFFNRHSPFHLISQFLQDTFS 744
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 451 TYDVHXLLPPNEDTSDIVKVTGTPTSVENAKQALTEKIAEMEKEK 585
T V +LPP T + K+ ++ + L K+A+ EKEK
Sbjct: 1039 TVPVTLVLPPKISTKEDTKLGEKCANIVQLQVDLLSKLADQEKEK 1083
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.7
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = -1
Query: 404 SFGTSTSIVIGTCSSRAFLAPSQFSGRPVILIMSLGPGSAFSSISLPGTSAPSVVSRSGN 225
S ST+ T SS + +A + + P I S S PG + PS++S +
Sbjct: 270 SLAASTASTGSTDSSGSNIANTLIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPS 329
Query: 224 FI*TSNSAVMSLTL 183
+ +S+V SL+L
Sbjct: 330 VSSSLSSSVASLSL 343
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +1
Query: 52 GPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVKDITAEFDVQIKFP 231
G + +E K RI + E+ K+ + HR ++ A G K+KD I+
Sbjct: 121 GALKHLEAKKRRIESMDEEKRRKIEES----DKWHRVLLQAEGKKLKDNEQLLKKSIRRK 176
Query: 232 ERDTTEGAD 258
E++ + +D
Sbjct: 177 EKEKKKSSD 185
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -3
Query: 180 TTCTHDSSVMSLWNHTFNRYLRFQILNNFI 91
T H ++ + HTF +++R L+NF+
Sbjct: 194 TLAEHVLRIVPVGTHTFEKFIRADELSNFL 223
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 116 ASKSSIISLIRALATSIHSFGPLSTTRSLLTPCRGKEI 3
+SKS+ ++ A A+ SF P ST+ + LTP K +
Sbjct: 174 SSKSASLTASSAAASPTVSFSPASTSEN-LTPTSSKSL 210
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 353 FLAPSQFSGRPVILI 309
+L PS+FS RPVI+I
Sbjct: 423 WLQPSEFSSRPVIVI 437
>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 764
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = +1
Query: 142 PQRHHRTVMGARGAKVKDITAEFDVQIKFPERDTTEGADVPGRDIDENAEPGPNDIIKIT 321
PQ V R AK E+D I+ D + + G D+ + EP ND+++
Sbjct: 446 PQTKEIRVTRNRFAKGLISQEEYDAFIRKEISDVVKFQEEVGLDVLVHGEPERNDMVQYF 505
Query: 322 GRPENCEG 345
G E EG
Sbjct: 506 G--ERMEG 511
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = -3
Query: 240 VTFREFYLNIKFSSDVLDFGTTCTHDSSVMSLWNHTFNRYLRFQILNNFIDSCFSYFNTF 61
V F+E++ KFSS G + + ++ W Y+ F I + S+ +
Sbjct: 206 VFFKEYFAYCKFSSLHPGLGFLDQY-TGILERW------YVLFNIT---MLRLVSFNMDY 255
Query: 60 FWSLKHDAVAVDTL 19
+WSLKH++ ++TL
Sbjct: 256 YWSLKHNSEKLNTL 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,896
Number of Sequences: 5004
Number of extensions: 43384
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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