Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0465
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 31 0.93
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 31 0.93
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 31 0.93
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 30 1.6
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 5.0
03_02_0332 + 7559469-7560892,7563193-7563298,7563403-7563491,756... 28 6.6
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 215 FK*NSLNVTLQKVQMFPAEILMRMLNQDLMT*LR*RVALKTARELKRLYLNRCLLQLTLK 394
FK N L LQKV+ P + DLMT L + TA++ LN+CL +
Sbjct: 3225 FKENMLTTLLQKVKYLPMYGQNIIEYTDLMTCLLGKANDSTAKQSDTELLNKCLTSDVVS 3284
Query: 395 C 397
C
Sbjct: 3285 C 3285
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 157 RTVMGARGAKVKDITAEFDVQIKFPERDTTEGADVPGRDIDENAEPGPNDIIK 315
R M A V+ T F + P RD VPG D D+ A PG ++++
Sbjct: 43 RLDMAKNAAAVESWTTSFYARSSAPARDGKAAVVVPGADADD-APPGGGEVVE 94
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -1
Query: 416 RRCNSFGTSTSIVIGTCSSRAFLAPSQFSGRPVILIMSLGPGSAFSSISLPGTSAPSV 243
RR S+ TSTS + SS + S + S GP S F I P +AP V
Sbjct: 449 RRIESYMTSTSTPMVKVSSAMTVVGSGVLSPRIAAFSSRGPSSLFPGILKPDIAAPGV 506
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Frame = +1
Query: 394 VPNELHRLLXG--QKRRELMQTYDVHXLLPPNEDTSDI-----VKVTGTPTSVENAKQAL 552
V NE H+ G +KR EL D L +I K++GTP + A+ +
Sbjct: 600 VTNEKHKYTAGPSRKRSELSMPVDAEILKSIRSTFIEIPIQQLYKISGTPHQISKAENLV 659
Query: 553 TEKIAEMEKEKEDRL 597
E + EM+ E+ +
Sbjct: 660 KEFLQEMDSMVEEEI 674
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 460 VHXLLPPNEDTSDIVKVTGTPTSVENAKQALTEKIAEME 576
V L PP+E+++ K T +S + QAL E ++ +E
Sbjct: 598 VSSLFPPSEESTKSTKFTSIGSSFKQQLQALLETLSSVE 636
>03_02_0332 +
7559469-7560892,7563193-7563298,7563403-7563491,
7563780-7563841,7564247-7564278
Length = 570
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 70 EVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVKDITAEFDVQIKFPERDTTE 249
EVA + + E+ + + IE + +HHR + A A+V D E VQ
Sbjct: 212 EVAPSDVPEVEFEQQGVRIIEAIDVNQHHRVALAA-PAEVVDAGLEERVQAIEAGSSGLT 270
Query: 250 GADVPGRDIDENAEPGPNDIIK 315
VP +DE +E +I+
Sbjct: 271 SETVPEEVLDELSEKQEEQVIE 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,663
Number of Sequences: 37544
Number of extensions: 274095
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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