Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0465
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.57 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   1.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   1.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 301 NDIIKITGRPENCEGAKKALLEQVPITIDVEVPNE 405
           NDI+K+    E   GA   L+    I IDV + N+
Sbjct: 69  NDILKVIEWVEKNLGAIDILINNATINIDVTLQND 103


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 280 ENAEPGPNDIIKITGRPENCE 342
           E+  PGP D++ +   P  CE
Sbjct: 68  EHKPPGPKDLVYLEPSPPFCE 88


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 280 ENAEPGPNDIIKITGRPENCE 342
           E+  PGP D++ +   P  CE
Sbjct: 69  EHKPPGPKDLVYLEPSPPFCE 89


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 352 KALLEQVPITIDVEVPNELHRLLXGQKRRELMQTYDVHXLLPPN 483
           +A+L++V    D +VP EL           +++T+  H    PN
Sbjct: 769 EAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYLPN 812


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 154 DVFVESHIQSLPSLPN 107
           D F+E+  ++LPSLP+
Sbjct: 665 DSFIEAPNKTLPSLPS 680


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 328 PENCEGAKKALLEQVPITIDVEVPNELH 411
           P N EG    L +     +DV +P +LH
Sbjct: 658 PANIEGTSYFLNDYKHKDVDVTLPLDLH 685


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 69  NTFFWSLKHDAVAVDTLPRK 10
           +T+F++ KH  V   T+P K
Sbjct: 121 DTYFYNGKHSYVHTITVPNK 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,325
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)