Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0465
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35150.1 68417.m04997 O-methyltransferase family 2 protein si... 32 0.25
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera... 30 1.0
At3g60910.1 68416.m06814 expressed protein low similarity to PIR... 29 1.8
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 29 2.4
At5g53060.1 68418.m06592 KH domain-containing protein 29 3.1
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 28 4.1
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 28 4.1
At1g22260.1 68414.m02782 expressed protein 28 4.1
At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P241... 27 7.2
At3g19553.1 68416.m02479 amino acid permease family protein weak... 27 7.2
At5g42490.1 68418.m05172 kinesin motor family protein contains P... 27 9.5
At5g36905.1 68418.m04423 RNase H domain-containing protein low s... 27 9.5
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 27 9.5
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 27 9.5
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 27 9.5
>At4g35150.1 68417.m04997 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase, Pinus
taeda, gb:U39301
Length = 325
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +1
Query: 31 SDRVVLK------GPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVK 192
SD V++K G K+CI++ K ++ ++ + +ECVI ++ + + R K++
Sbjct: 212 SDAVIIKWVLHDWGDKDCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLE 271
Query: 193 DITAEFDV 216
+ + D+
Sbjct: 272 HVRLQLDM 279
>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
putative similar to polynucleotide phosphorylase
GB:AAC50039 [Pisum sativum], identical to putative
polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
thaliana]
Length = 922
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 368 CSSRAFLAPSQFSGRPVILIMSLGPGSAFSSISLPGTSAPSVVSRSG 228
CS L+ S+++ P+ILIM + P +S I G S++ SG
Sbjct: 679 CSPPPTLSLSKYA--PLILIMKVHPSKVYSLIGSGGKKVKSIIEESG 723
>At3g60910.1 68416.m06814 expressed protein low similarity to
PIR|I46078 endothelin converting enzyme from Bos
primigenius taurus
Length = 252
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 325 RPENCEGAKKALLEQVPITIDVEVPNE 405
RPE+C + K+ +E +PIT + +P++
Sbjct: 191 RPESCSSSAKSCMEAIPITSEGMLPHD 217
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 29.1 bits (62), Expect = 2.4
Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 7/197 (3%)
Frame = +1
Query: 16 RQGVNSDRVVLKGPKECIE---VAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARG-- 180
+ G+NS K KE E + KA EI D + + + + H ++
Sbjct: 157 KSGLNSSSTSSKSKKEGSENVRIKKASDKEIALDSASMSSAQ----EDHQEEILKVESDH 212
Query: 181 AKVKDITAEFDVQIKFPERDTTEGADVPGRDIDENAEP-GPNDIIKITGRPENCEGAKKA 357
+V D E + + + E++ E ++E AE GP + G+ +C
Sbjct: 213 LQVSDHDIE-EPKYEKEEKEVQEKVVQANESVEEKAESSGPTPVASPVGK--DCNAVVAE 269
Query: 358 LLEQ-VPITIDVEVPNELHRLLXGQKRRELMQTYDVHXLLPPNEDTSDIVKVTGTPTSVE 534
L E+ + D+E E + + + + DV + NE + + SVE
Sbjct: 270 LEEKLIKNEDDIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEVESVE 329
Query: 535 NAKQALTEKIAEMEKEK 585
Q E++ E KE+
Sbjct: 330 ETTQEKEEEVKEEGKER 346
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 379 TIDVEVPNELHRLLXGQKRRELMQTYD-----VHXLLPPNEDTSDIVKVTGTPTSVENAK 543
T++V +P + L + R +L Q + V + E+T +I++++GTP E A+
Sbjct: 578 TLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQ 637
Query: 544 QALTEKIAEMEKE 582
L I ++++
Sbjct: 638 SLLQGFILSIQED 650
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 70 EVAKARINEIIED----LEAKVT---IECVIPQRHHRTVMGARGAKVKDITAEFDVQIKF 228
E+ + E+ ED +E +VT E +I + V+G +G +++++T+ + KF
Sbjct: 20 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKF 79
Query: 229 PERDTTE 249
P+ D+ E
Sbjct: 80 PQ-DSVE 85
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites
at intron 18
Length = 1606
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 330 RATRYLNYVIRSWFSILINISAGNICTFCSVTFREFYLNI 211
+ R L+Y +RS++ +N+ A N+C+ +++ Y +I
Sbjct: 462 KPNRVLHYPVRSFYIEGLNLMAHNLCSGTDNIYKKLYTSI 501
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 496 DIVKVTGTPTSVENAKQALTEKIAEMEKEKE 588
++ +V T ++E+A L EKI E++ +KE
Sbjct: 346 ELFRVAATKEALESAGNELNEKIVELQNDKE 376
>At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P24142
Prohibitin (B-cell receptor associated protein 32) (BAP
32) {Rattus norvegicus}; contains Pfam profile PF01145:
SPFH domain / Band 7 family; non-consensus TT acceptor
splice site at exon 2
Length = 278
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 154 HRTVMGARGAKVKDITAEFDVQIKFPERDTTEGADVPGRDIDENAEPGPNDIIKIT 321
HR ++ R +KD K P + DV R EN++ G ND+ +T
Sbjct: 43 HRAIVFNRFTGIKDRVYPEGTHFKIPLFERAIIYDVRSRPYVENSQTGSNDLQTVT 98
>At3g19553.1 68416.m02479 amino acid permease family protein weak
similarity to aspartate/glutamate transporter 1 [Mus
musculus] GI:21322754; contains Pfam profile PF00324:
Amino acid permease
Length = 479
Score = 27.5 bits (58), Expect = 7.2
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = -3
Query: 318 YLNYVIRSWFSILINISAGNICTFCSVTFREFYLNIK------FSSDVLDFGTTCTHDSS 157
+L+Y+ S F +L +++A + +TF YLN + FS+ VL + C
Sbjct: 122 FLDYLKHS-FPVLDHVAA-RVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPF--V 177
Query: 156 VMSLWNHTFNRYLRFQILNNFIDSCFSYFNTFFWSLKH 43
VM+L R R+ ++ + YFNT FW+L +
Sbjct: 178 VMALLAVPNIRPKRWLFVDTQKINWRGYFNTMFWNLNY 215
>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1087
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 331 ENCEGAKKALLEQVPITIDVEV-PNELHRLLXGQKRRELMQTYDVHXLLPPNEDTSDIVK 507
E+CE + Q T++VE+ PN+ R + NE S + K
Sbjct: 610 EDCELNSLPINNQSEATVEVELTPNDAKLDEDATSRDKWESKQQQEADKDCNE--SSVCK 667
Query: 508 VTGTPTSVENAKQALTEKIAEMEKEKE 588
GT + + AL EK+ EM+K+ E
Sbjct: 668 NIGTDDNDNDTYMALKEKVKEMQKKIE 694
>At5g36905.1 68418.m04423 RNase H domain-containing protein low
similarity to reverse transcriptase [Arabidopsis
thaliana] GI:976278; contains Pfam profile PF00075:
RNase H
Length = 633
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = -3
Query: 204 SSDVLDFGTTCTHDSSVMSLWNHTFNRYLRFQILNNFIDSCFSYFNT-----FFWSLKHD 40
S+D +G T +V S ++ + Q + F D + T F W + H
Sbjct: 251 SNDRTSWGATANGQFTVKSAYSFLLQSETQAQNMRQFFDRVWRVTTTERVRVFIWLVVHQ 310
Query: 39 AVAVDTLPRKRNL 1
+ D R+R+L
Sbjct: 311 VIMTDVERRRRHL 323
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 70 EVAKARINEIIED----LEAKVT---IECVIPQRHHRTVMGARGAKVKDITAEFDVQIKF 228
E+ + E+ ED +E +VT E +I + V+G +G +++++T+ + KF
Sbjct: 20 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKF 79
Query: 229 P 231
P
Sbjct: 80 P 80
>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
PF02984: Cyclin, C-terminal domain
Length = 1025
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 478 PNEDTSDIVKVTGTPTSVENAKQALTEKIAEMEKEKEDR 594
P+ T+D+ K G P S+ + A EK K+D+
Sbjct: 527 PSSTTTDLKKGMGLPRSLSRTASVFSSSAALFEKLKKDK 565
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 70 EVAKARINEIIED----LEAKVT---IECVIPQRHHRTVMGARGAKVKDITAEFDVQIKF 228
E+ + E+ ED +E +VT E +I + V+G +G +++++T+ + KF
Sbjct: 20 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKF 79
Query: 229 P 231
P
Sbjct: 80 P 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,867
Number of Sequences: 28952
Number of extensions: 223642
Number of successful extensions: 577
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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