Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0464
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    28   0.81 
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    25   4.3  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   4.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   7.5  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    24   9.9  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    24   9.9  

>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   IQPSYMKGFTSGTQLSSVPA 64
           +  S M GF +GTQ+SS PA
Sbjct: 76  VSSSAMNGFVNGTQISSTPA 95


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 227 GQFTGSTGAQILTPKELASGTQAWAKKL 310
           G+ T + G Q+++ +   S  ++WAKK+
Sbjct: 202 GRITDTGGLQLISKETFPSFQESWAKKI 229


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 370 NVLPNARINYNVRLLLREAW 429
           N+LPN R N+N R   R A+
Sbjct: 300 NLLPNVRENFNARKTFRTAY 319


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 104 EPAPIDMALIVSQKLSMIRKEQEESELLS 190
           +P PID       +L+ +++E+E+S +LS
Sbjct: 49  QPRPIDADKAHKIQLARLQREEEQSRILS 77


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 32  TSGTQLSSVPALAAPGPQAYPPGIEPAPIDMAL 130
           T+G   +SVP++ A  P AY P    A +   L
Sbjct: 28  TAGFSGTSVPSVQAANPSAYLPNSATAQMGFQL 60


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 115 GSGLYSWRISLWSRGC 68
           GS +YS  I +WS GC
Sbjct: 175 GSRVYSTSIDIWSVGC 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,918,310
Number of Sequences: 5004
Number of extensions: 37023
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)