Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0464
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156 28 3.2
07_03_1165 - 24459156-24460139 28 3.2
06_01_0088 + 698237-698251,698738-698770,699177-699280,699382-69... 28 3.2
11_06_0335 + 22441240-22441548,22441958-22442028,22442321-224423... 28 4.3
07_03_0382 + 17470508-17470807,17471449-17474517 27 5.6
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 27 5.6
12_01_0627 + 5171131-5171516,5171869-5172074,5172533-5172597,517... 27 7.4
10_05_0072 + 8839223-8839720 27 7.4
06_01_0855 + 6493239-6494420 27 7.4
05_03_0182 + 9332280-9332363,9334212-9334286,9334390-9334437,933... 27 7.4
04_03_0944 - 20964883-20964913,20966688-20967145 27 7.4
10_06_0059 - 10149439-10149477,10150001-10150927 27 9.8
10_02_0049 - 4580417-4580602,4580955-4581833 27 9.8
03_02_0457 + 8638318-8638336,8640394-8640497,8640613-8640778,864... 27 9.8
>12_01_0362 - 2746626-2747726,2748358-2748982,2749086-2749156
Length = 598
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 29 FTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVS 139
F T+ S P+ P PQ PPG P D+A++ S
Sbjct: 247 FGIDTRSSPPPSPPHPRPQPPPPGSSDLPTDVAILPS 283
>07_03_1165 - 24459156-24460139
Length = 327
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 62 ALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLST 193
+LA PG A PP PAP A+ + + + ++ + EL+ T
Sbjct: 250 SLAPPGQLAAPPTPTPAPAPAAIAAVEAEAEVAEDGDGGELVPT 293
>06_01_0088 +
698237-698251,698738-698770,699177-699280,699382-699457,
699987-700070,700420-700926
Length = 272
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 35 SGTQLSSVPALAAPGPQAYPPGIEPAP---IDMALIVSQKLSMIRKEQEESELLSTHGFG 205
SG + + + AP P+ PP AP ++ VS+ +++ K ++ + GF
Sbjct: 76 SGATIVDLSVIIAPAPEYQPPPTSSAPPMYSATSVPVSEDNNVVHKAEDVVSTMLAKGFT 135
Query: 206 WSKDS 220
KD+
Sbjct: 136 LGKDA 140
>11_06_0335 +
22441240-22441548,22441958-22442028,22442321-22442381,
22443252-22443326,22443431-22443478,22443565-22443666,
22443971-22444032,22444187-22444284,22444361-22444470
Length = 311
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 137 SQKLSMIRKEQEESELLSTHGFGWSKDSALGQFTGS-TGAQILTP 268
+++++ ++KE E+ E+L G G ++ G F G TG++ P
Sbjct: 181 AERIAALKKEVEKREVLKRQGHGEYREITEGDFLGEVTGSEKNAP 225
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +2
Query: 158 RKEQEESELLSTHGF-GWSKDSALGQFTGSTGAQILTPKELAS 283
RKEQ + + F GWS D G G TGA L +L S
Sbjct: 374 RKEQTQESWQRVYEFEGWSFDDLRGDVQGLTGAIYLGYHDLPS 416
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 32 TSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESEL-LSTHGFGW 208
T GT ++P AA P PG+ P P+ L ++ K Q++++L L
Sbjct: 346 TQGTPCMAMPMPAARFPAPPVPGVVPCPMYRPLTPP---ALASKNQQDAQLQLQVQPSSE 402
Query: 209 SKDSALG 229
S D+A+G
Sbjct: 403 SIDAAIG 409
>12_01_0627 +
5171131-5171516,5171869-5172074,5172533-5172597,
5173115-5173355,5173635-5174095
Length = 452
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 38 GTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLSTHGF 202
G ++ V L P P + +DM L V K+ R EQE ++L GF
Sbjct: 244 GGKVIIVEGLLPETPNTTPAAQDSFTMDMILFVLFKVGKHRTEQEFAKLAKESGF 298
>10_05_0072 + 8839223-8839720
Length = 165
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +2
Query: 17 YMKGFTSGTQLSSVPA-----LAAPGPQAYPPGIEPAPID 121
Y+K F+SG+ ++ P AAP P A P EPAP +
Sbjct: 72 YLKDFSSGSGGAAPPPPAAGDAAAPKPAAEEPPKEPAPAE 111
>06_01_0855 + 6493239-6494420
Length = 393
Score = 27.1 bits (57), Expect = 7.4
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +2
Query: 2 LIQPSYMKGFTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESE 181
L++P+Y + + LSS+ L A P EP ++ L+ + L+ + + +
Sbjct: 13 LLRPAYPHPTAAISPLSSLRRLLLFSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKK 72
Query: 182 LLSTHGFGWSKDSALGQFTGSTGAQILTPKELASGTQAWAKKLVCDTE 325
L +H SK A+ F G L P+++A+ A + L D E
Sbjct: 73 L--SHLRSPSKPDAVLAFLSDLG---LPPRKIAAVATADPRFLCADVE 115
>05_03_0182 +
9332280-9332363,9334212-9334286,9334390-9334437,
9334513-9334596,9334905-9334966,9335109-9335206,
9335281-9335390
Length = 186
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 137 SQKLSMIRKEQEESELLSTHGFGWSKDSALGQFTGSTGAQILT 265
+++++ ++KE E+ E+L G G ++ G F G +T
Sbjct: 62 AERIAALKKEVEKREVLKRQGHGEYREITEGDFLGENAPFFVT 104
>04_03_0944 - 20964883-20964913,20966688-20967145
Length = 162
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +2
Query: 95 PGIEPAP-IDMALIVSQKLSMIRKEQEESELLSTHGFGWSKDSALGQFTGSTGAQILTPK 271
PG P I L+VS + + + S L + G K QF A + TP+
Sbjct: 83 PGGSPLTRIAQMLVVSARKWSVEVPADRSRLHESSIKGSHKLEHTKQFACLDRAAVETPE 142
Query: 272 ELASGTQAWAKKLVCDTE 325
++ S + AW L +E
Sbjct: 143 DMTSSSSAWRPNLGYSSE 160
>10_06_0059 - 10149439-10149477,10150001-10150927
Length = 321
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 264 PQRNWPAVRRLGLKSLFVIRRRCTLDARR 350
P+R W A+RR+G + L R+ LD RR
Sbjct: 120 PRRKWRALRRIGAEHLLSARQ---LDGRR 145
>10_02_0049 - 4580417-4580602,4580955-4581833
Length = 354
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 264 PQRNWPAVRRLGLKSLFVIRRRCTLDARR 350
P+R W A+RRL LF RR LDA R
Sbjct: 119 PRRRWRALRRLSTVGLFSPRR---LDAMR 144
>03_02_0457 +
8638318-8638336,8640394-8640497,8640613-8640778,
8641403-8641467
Length = 117
Score = 26.6 bits (56), Expect = 9.8
Identities = 22/66 (33%), Positives = 26/66 (39%)
Frame = +2
Query: 14 SYMKGFTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLST 193
SY KG+ SG + P PG Y G L + LS IR + LLS
Sbjct: 47 SYRKGYGSGKKWDGGPGGGGPGGGPYGGGRGGGG---GLRGPRTLSDIRSNDQSPVLLSL 103
Query: 194 HGFGWS 211
H G S
Sbjct: 104 HIIGLS 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,399,118
Number of Sequences: 37544
Number of extensions: 277892
Number of successful extensions: 978
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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