Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0464
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)               29   2.5  
SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)               27   7.7  
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)                    27   7.7  
SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_55125| Best HMM Match : zf-C2HC (HMM E-Value=1.5e-13)
          Length = 405

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 35  SGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESEL 184
           S  + S+VP+ A P P   PP   P     A+I  Q+     +E+E++EL
Sbjct: 340 STPKTSAVPSPATPNPDDPPPKKRPGRPSNAMIKEQR-EREEREREKAEL 388


>SB_30044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 227 GQFTGSTGAQILTPKELASGTQAWAK 304
           GQ  G   AQ LT K+ ASG  AW +
Sbjct: 511 GQLLGGYIAQFLTNKQEASGWPAWCR 536


>SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)
          Length = 502

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 32  TSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQ 142
           TSG+QL+    L A  P  Y P +   P+  +  VS+
Sbjct: 180 TSGSQLTDTTLLPAVVPLTYEPMVISGPVTSSQFVSE 216


>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
          Length = 815

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +2

Query: 17  YMKGFTSG-TQLSSVPALAAPGPQAYPPGI-EPAPIDMALIVSQKLSMIRKEQEES-ELL 187
           Y   F +  T L S  +    G Q++   + +  P D AL V + ++  +KE EES E +
Sbjct: 245 YQNAFKAAFTLLKSAKSGDGGGEQSFLLFLTDGGPKDDALAVERLIAQNKKEMEESRERV 304

Query: 188 STHGFGWSKDSALGQFTG 241
           +    G  KD  +  F G
Sbjct: 305 TIMTIGLGKDEHMKNFLG 322


>SB_14887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +2

Query: 17  YMKGFTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLS 190
           ++ G   G+  SSVPA        Y   ++ +  D   +  QKL      QEES  LS
Sbjct: 682 FVNGEDCGSAASSVPAGVYAIIDLYGQCVQVSVYDEDYVEQQKLPSSHPSQEESRALS 739


>SB_6355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 354 STVVRLTYSVSVSQTSFLAQACVPLASSFGVKICA 250
           S V++LT ++ +++  F ++AC P  S  G K CA
Sbjct: 537 SEVLQLTGAIQLTEWGF-SEACHPYTSGRGAKHCA 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,066,397
Number of Sequences: 59808
Number of extensions: 297980
Number of successful extensions: 982
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)