Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0464
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 29 1.2
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 29 1.2
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 1.6
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 28 3.8
Z81138-6|CAB03476.2| 515|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical pr... 27 6.6
AL023844-14|CAO82065.1| 515|Caenorhabditis elegans Hypothetical... 27 6.6
Z81531-10|CAE17807.1| 367|Caenorhabditis elegans Hypothetical p... 27 8.8
Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical pr... 27 8.8
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 AAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLSTHGFGW-SKDSALGQFTGS 244
+A ++ P EP P + KEQE+ +L T+G GW SK+ F+ S
Sbjct: 104 SATPSSSFAPSTEPTPTVPDKVDDGSEDTEHKEQEQQTVLCTYGNGWKSKNQPPHDFSFS 163
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 AAPGPQAYPPGIEPAPIDMALIVSQKLSMIRKEQEESELLSTHGFGW-SKDSALGQFTGS 244
+A ++ P EP P + KEQE+ +L T+G GW SK+ F+ S
Sbjct: 104 SATPSSSFAPSTEPTPTVPDKVDDGSEDTEHKEQEQQTVLCTYGNGWKSKNQPPHDFSFS 163
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 206 SQSHEYSTIRFLLVPYESLTISVIQSMPCRWERALFLADKLV 81
+Q HE RF P E+ S++Q PCR L D+LV
Sbjct: 194 NQVHEQRQNRFFSSPLETFVRSILQVSPCRCLFLLRKFDQLV 235
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +2
Query: 206 WSKDSAL-GQFTGSTGAQILTPKELASGT---QAWAKK 307
W+ +L G++TG+TG ++LT EL AW KK
Sbjct: 590 WAALKSLPGEYTGTTGLRLLTADELQPQNPKYHAWVKK 627
>Z81138-6|CAB03476.2| 515|Caenorhabditis elegans Hypothetical
protein W05B2.7 protein.
Length = 515
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 388 RINYNVRLLLREAWVCICCTRWVG 459
R +N + E+ VC C RW+G
Sbjct: 165 RAEFNANKIEHESVVCACLCRWIG 188
>Z70756-9|CAA94797.1| 275|Caenorhabditis elegans Hypothetical
protein T06E4.11 protein.
Length = 275
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 71 APGPQAYPPGIEPAP 115
APGPQ YP G++ +P
Sbjct: 156 APGPQQYPQGLQGSP 170
>AL023844-14|CAO82065.1| 515|Caenorhabditis elegans Hypothetical
protein W05B2.7 protein.
Length = 515
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 388 RINYNVRLLLREAWVCICCTRWVG 459
R +N + E+ VC C RW+G
Sbjct: 165 RAEFNANKIEHESVVCACLCRWIG 188
>Z81531-10|CAE17807.1| 367|Caenorhabditis elegans Hypothetical
protein F36D3.13 protein.
Length = 367
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = -2
Query: 254 VLLSIQ*TDLAHCPLTSQSHEYSTIRFLLVPYESLTISVI 135
V++++ T L PL+ + H ST+++ L+P S+ + +I
Sbjct: 130 VVMAVFRTLLIKYPLSHRLHRMSTLKYKLLPIISILLIII 169
>Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical
protein K04G2.6 protein.
Length = 694
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 44 QLSSVPALAAPGPQAYPPGIEPAPIDM-ALIVSQKLSMIRKEQE 172
+L +VPAL + Y P + P ID L++ K ++ R++ E
Sbjct: 630 RLQAVPALVSIDNSPYAPKVPPCRIDFPPLMLHFKAALARRQTE 673
>Z54342-3|CAA91154.1| 394|Caenorhabditis elegans Hypothetical
protein C08H9.6 protein.
Length = 394
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 172 RKRIVEYSWLWLVKGQCARSVHWIDRSTDLNPKGT 276
+KR+V YS +L Q + H+I S + P GT
Sbjct: 51 QKRVVAYSAKFLSNHQLKKLTHFIFTSISIFPNGT 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,901,449
Number of Sequences: 27780
Number of extensions: 217090
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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