Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0464
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.93 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.93 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 38  GTQLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQKL 148
           G ++   P L  P      P   P P+D+A+ V + L
Sbjct: 426 GIRVERDPILTPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 0.93
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 170 LVPYESLTISVIQSMPCRWERALFLADKLV 81
           ++P     +  ++ +PC W RA+ +A++ V
Sbjct: 533 VIPGTQEHVCGVKGIPCSWGRAINVANRYV 562


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +1

Query: 346 DGTALINQNV-------LPNARINYNVRLLLREAWV 432
           DG A++  N+       + + ++ Y+V+L  RE W+
Sbjct: 56  DGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,449
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)