Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0464
(465 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp... 30 0.89
At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 28 3.6
At4g09630.1 68417.m01583 expressed protein contains Pfam profile... 27 4.7
At5g43310.1 68418.m05293 COP1-interacting protein-related contai... 27 6.2
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica... 27 6.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 6.2
At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM ... 27 6.2
At5g01750.2 68418.m00094 expressed protein contains Pfam profile... 27 8.3
At5g01750.1 68418.m00093 expressed protein contains Pfam profile... 27 8.3
>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 679
Score = 29.9 bits (64), Expect = 0.89
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 44 QLSSVPALAAPGPQAYPPGIEPAPIDMALIVSQK-LSMIRKEQEESELLSTHGFGWSKD 217
Q +S A A+ P PP I + ALIVS+ L + RK E S + H F WS D
Sbjct: 382 QSNSNKAPASVAPIEPPPEIRSCVENTALIVSKNGLEIERKMMELSMNDARHRFVWSTD 440
>At1g29080.1 68414.m03560 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 346
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 206 WSKDSALGQFTGSTGAQILTPKELASGTQ-AW 298
W+K+ L +TG G + +P E+ + T+ AW
Sbjct: 91 WTKEEFLATYTGLRGVNVTSPFEVVNETKPAW 122
>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
PF04765 protein of unknown function (DUF616)
Length = 711
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 79 TTSLSARNRARSHR-HGIDCITEIVNDS 159
T+ A+ RARSHR G+ C +++N S
Sbjct: 333 TSQTDAKRRARSHRFSGVSCEMKLLNSS 360
>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
similarity to COP1-Interacting Protein 7 (CIP7)
[Arabidopsis thaliana] GI:3327868
Length = 1237
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 1 VNSTKLHEGFHIRNAIIIGSRFSSPGTTSLSARNRARSHRHGIDCITE 144
V+S + G + RNAI IGS SS T + R + H + I E
Sbjct: 617 VSSARDEAGRNKRNAIDIGSEISSCYQTDGNERKQVNYEPHDLSLIPE 664
>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
to gi_3883126_gb_AAC77826
Length = 135
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 59 PALAAPGPQAYPPGIEPAPIDM 124
P A P P PP + P+P D+
Sbjct: 61 PPAATPAPATTPPSVAPSPADV 82
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 27.1 bits (57), Expect = 6.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 29 FTSGTQLSSVPALAAPGPQAYPPGIEP 109
F G+Q +S P +A P P PP P
Sbjct: 234 FPRGSQFTSGPMMAPPPPYGQPPNAGP 260
>At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 294
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 146 LSMIRKEQEESELLSTHGFGWSKDSALGQ 232
LS I+KE + +L S+H F SK+ LG+
Sbjct: 13 LSKIKKETGKLQLSSSHSFSSSKNWVLGK 41
>At5g01750.2 68418.m00094 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 217
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 8 QPSYMKGFTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALI 133
QP Y+ + G+ S P A G P P PIDMA++
Sbjct: 3 QP-YVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIV 43
>At5g01750.1 68418.m00093 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 174
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 8 QPSYMKGFTSGTQLSSVPALAAPGPQAYPPGIEPAPIDMALI 133
QP Y+ + G+ S P A G P P PIDMA++
Sbjct: 3 QP-YVYAYPQGSGPSGAPTPQAGGVVVDPKYCAPYPIDMAIV 43
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,882
Number of Sequences: 28952
Number of extensions: 206771
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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