Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0463
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    28   0.71 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   2.2  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    24   8.7  
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    24   8.7  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   8.7  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    24   8.7  

>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 347 EQNARKKFKNVRSPAETPPTLMNFHDFSSQSFR 249
           E+ +  +F N +SP +TP    ++ DF   S+R
Sbjct: 36  ERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYR 68


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 320 NVRSPAETPPTLMNFHDFSSQSFRD 246
           N+  P      L++FH+FSS SF D
Sbjct: 17  NLCIPCSLGTCLIHFHEFSSSSFMD 41


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 184 KNYYYASYRGRKL 146
           +NYYY+ + GRKL
Sbjct: 562 QNYYYSCHNGRKL 574


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 156 VGSCAYIYVHHLNG 115
           +G+  + YVHHLNG
Sbjct: 281 MGNYVFSYVHHLNG 294


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 287 LMNFHDFSS-QSFRDYHTCSSS 225
           L+  H F S  SF DYH+C ++
Sbjct: 618 LLRMHKFLSVYSFMDYHSCHAA 639


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 323 KNVRSPAETPPTLMNFHDFSSQSFRDYH 240
           KNV++PA   PT + F D +     D H
Sbjct: 46  KNVQAPATYIPTDVEFFDINEPDKPDLH 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,897
Number of Sequences: 5004
Number of extensions: 31110
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)