Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0463
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0696 + 23617687-23617851,23618838-23619536                       28   2.8  
01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    28   2.8  
04_04_0680 - 27217563-27220088                                         27   4.9  
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364...    27   6.4  
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316...    27   6.4  
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    27   6.4  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   8.5  

>06_03_0696 + 23617687-23617851,23618838-23619536
          Length = 287

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 408 ARVPPRTSSAPVHPPQCTAT 349
           AR P R  S  VH P+CTAT
Sbjct: 3   ARAPSRLPSVVVHLPRCTAT 22


>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 302 ETPPTLMNFHDFSSQSFRDYHTCSS 228
           +TP  +  FHDFSS SFR  +T  S
Sbjct: 11  KTPLDIRRFHDFSSLSFRCRNTFGS 35


>04_04_0680 - 27217563-27220088
          Length = 841

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 300 LGWAANIFEFFPSVLFVSRYIG 365
           +GW     +F PS  FV  YIG
Sbjct: 680 MGWGVRTLDFIPSGSFVCEYIG 701


>04_04_1537 -
           34235360-34235486,34236107-34236234,34236344-34236483,
           34236967-34237023,34237358-34237475,34237585-34237734,
           34237857-34237941,34238040-34238104,34238351-34238500,
           34238835-34238910,34239071-34239150
          Length = 391

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 384 SAPVHPPQCTATRTKRSEKIQKCSQPSRDP 295
           SA  H P C    T  S +  K + PSR+P
Sbjct: 319 SARKHKPSCNLATTVASREPPKTTAPSREP 348


>03_06_0656 -
           35330109-35331011,35331154-35331360,35331455-35331632,
           35331726-35332221,35332889-35333033
          Length = 642

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 381 APVHPPQCTATRTKRSEKIQKCSQPSRDPA 292
           +P H P  T T     EK+Q  SQ S  PA
Sbjct: 537 SPAHFPALTGTIPATPEKVQSQSQASSSPA 566


>01_01_0911 -
           7176355-7176372,7176502-7176756,7177352-7177615,
           7177691-7177810,7177910-7178041,7178136-7178252,
           7178335-7178459,7178611-7178920,7179368-7179550,
           7179643-7179787,7180126-7181355,7181454-7181563,
           7181768-7182037,7182130-7182963
          Length = 1370

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 426 ILCTFRARVPPRTSSAPVHPPQCTATRTKRSEKIQ-KCSQPSRD 298
           ++  +R + P  +SSAP  PP  T T    +     K S PS D
Sbjct: 487 LIAAWRDQNPAASSSAPTPPPPATTTMDSPAAAAPFKISSPSPD 530


>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
            7139996-7140076,7140805-7140895,7141242-7141330,
            7141749-7141802,7141906-7142085,7142175-7142237,
            7142575-7142705,7142807-7142900,7143343-7143684,
            7143957-7144348,7145010-7148487,7149101-7149187,
            7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 399  PPRTSSAPVHPPQCTATRTKRSEKIQKCSQPS 304
            PP+  SA V P + T T  K SE+ +   +PS
Sbjct: 1115 PPQDDSASVEPSENTITLEKASEEDEGSVKPS 1146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,565,311
Number of Sequences: 37544
Number of extensions: 221255
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)