Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0463
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.6  
SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                27   6.6  
SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)                       27   8.7  
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 175 YYASYRGRKLRLYLRTPFKRGMW 107
           Y  + R R+LR Y  TP K G W
Sbjct: 183 YSMNKRFRRLRTYSETPIKTGAW 205


>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 396 PRTSSAPVHPPQCTATRTKRSEKIQKCSQPSR 301
           P     PV PP+  AT+T ++EK  K S   R
Sbjct: 505 PPAKPKPVKPPKQQATKTPKAEKPPKKSASKR 536


>SB_51168| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 288

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 411 RARVPPRTS---SAPVHPPQCTATRTKRSEKIQKCSQPSRDPA 292
           RAR PP T+   + PV   +  + R +R  KI   + P +DP+
Sbjct: 78  RARSPPWTAPEPNPPVDSARARSFRGQRQSKIPPWTAPEQDPS 120


>SB_44772| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 845

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 163 YRGRKLRLYLRTPFKRGMWKFRIFIYY 83
           Y    LRLY +T   +G WK  + I Y
Sbjct: 131 YSKEALRLYQKTSDDQGQWKLNLLIGY 157


>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 326 FKNVRSPAETPPTLMNFHD 270
           FK V SPA+TP   ++FH+
Sbjct: 432 FKPVTSPADTPEISLSFHE 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,351
Number of Sequences: 59808
Number of extensions: 245851
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)