Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0463
(428 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58440.1 68418.m07319 phox (PX) domain-containing protein sim... 29 1.3
At5g01120.1 68418.m00016 hypothetical protein contains Pfam prof... 28 3.1
At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase... 27 5.4
At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar t... 26 9.4
At4g18400.1 68417.m02731 expressed protein 26 9.4
At4g14713.2 68417.m02262 expressed protein 26 9.4
At4g14713.1 68417.m02261 expressed protein 26 9.4
At1g55950.1 68414.m06417 hypothetical protein contains Pfam pro... 26 9.4
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 26 9.4
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 26 9.4
>At5g58440.1 68418.m07319 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 587
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 344 QNARKKFKNVRSPAETPPTLMNFHD----FSSQSFRDYHTCSSS*RGPLSNDN 198
++A NVR P PPT+M D + S+ D+ + SS P+S+DN
Sbjct: 51 RSAMSTLSNVRDPLSPPPTVMIPADSDPLLAPSSYEDFRSSFSS--KPISSDN 101
>At5g01120.1 68418.m00016 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 510
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 350 HEQNARKKFKNVRSPAETPPTLMNFHDFSSQSFRDYHTCSSS 225
H +K+ N PPT F FS+ FR+Y +S
Sbjct: 345 HYYKCQKQLLNDVVTTHQPPTYYRFVSFSADHFREYRLSENS 386
>At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase,
putative similar to SP|P34047
Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19)
(IGPD 1) {Arabidopsis thaliana}; contains Pfam profile
PF00475: imidazoleglycerol-phosphate dehydratase
Length = 272
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 411 RARVPPRTSSAPVHPP 364
RA +PPRTS A HPP
Sbjct: 19 RALLPPRTSIASSHPP 34
>At5g21100.1 68418.m02513 L-ascorbate oxidase, putative similar to
L-ascorbate oxidase [Precursor] SP:Q40588 from
[Nicotiana tabacum]
Length = 573
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 397 PAHLVRPRTPTPMYRDTNKTLGKNSKMFAAQPRPR 293
P+H P TP++ DT+++ + K+FAA+ P+
Sbjct: 325 PSH---PPPVTPIWNDTDRSKSFSKKIFAAKGYPK 356
>At4g18400.1 68417.m02731 expressed protein
Length = 107
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 399 PPRTSSAPVHPPQCTAT 349
PP +SS P HPP T+T
Sbjct: 17 PPESSSQPEHPPPETST 33
>At4g14713.2 68417.m02262 expressed protein
Length = 261
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 384 SAPVHPPQCTATRTKRSEKIQKCSQPS 304
S PV+PP+ T T + S +++ C + S
Sbjct: 79 SQPVNPPRVTTTLIEPSNELEACGRVS 105
>At4g14713.1 68417.m02261 expressed protein
Length = 313
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 384 SAPVHPPQCTATRTKRSEKIQKCSQPS 304
S PV+PP+ T T + S +++ C + S
Sbjct: 79 SQPVNPPRVTTTLIEPSNELEACGRVS 105
>At1g55950.1 68414.m06417 hypothetical protein contains Pfam
profile: PF04504 protein of unknown function, DUF573
Length = 203
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 354 ATRTKRSEKIQKCSQPSRDPA 292
A + KRS++ KC +P +DP+
Sbjct: 2 AKKNKRSQQKNKCLKPEKDPS 22
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 368 HPNVPRHEQNARKKFKNVRSPAET 297
HP+ R+ +A++KF+ +R ET
Sbjct: 76 HPDTNRNNPSAKRKFQEIREAYET 99
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 368 HPNVPRHEQNARKKFKNVRSPAET 297
HP+ R+ +A++KF+ +R ET
Sbjct: 76 HPDTNRNNPSAKRKFQEIREAYET 99
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,946,607
Number of Sequences: 28952
Number of extensions: 168861
Number of successful extensions: 426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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